Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03497 ATGGAGGCGCAACCCCAACCTCCAACGCCGTCAGCACCACCACCGTTATCCTCCGTCGCACCACCGCCACCACACCTCAACTACCCCGATTCAGTCGACTCGTCCCCTCGTTCCCGTAACAACGATTCATGGGACGAGCCTTTCCCTCCGGCGTCAACCAAACTCCGTCTCATGTGCAGTTACGGCGGACACATCGTTCCTCGTCCACATGATAAGTCTCTCTGTTACGTCGGCGGTGATACGAGGATTGTGGTGGTTGAGCGTGCGACCTCACTCGCGGAGTTATCCACGCGCCTCTCGAAAACCTTCCTTAATGGAAGAGCGTTCACTCTGAAGTATCAGCTTCCGAACGAGGATTTGGATTCGCTGATTTCTGTTACGACTGATGAGGATTTGGAGAATATGATCGATGAATACGATCGAACGGCTTCGGTGAATTCATCCATCAAACCCTCGCGGATTCGGCTTTTTCTGTTTCCGACTAAACCTGAATCTACTCACTCGATTCCGCCGCAGATTCTCGATACTTCGGCGAAATCGGATGATTGGTTCCTTGATGCGTTAAACGGCGCTGGATTGCTTAACCGAGGGTTTTCTGATTCGGCGTCTGTGAACAATCTGTTAGGTCTTGATGATGATGTTGCTGGGAATATTATTGAACCTGGTATACGGGAGCCTCCTGAAGGTGTTTCTCAACCTGGATCTTTTGGTAAGAATTTGAAGCAGGATGTTCATTCTGTTCCGGATTCGCCTATGATGGAGACTTCCTCGTCGTTTGGTTCGACTTCTTCGTCGCCGTCGTTGGCGAATTTGCCTCCGATTAGAGTGCATGTGGAAGATGGGAGTTCTGGTGGAGTTAGGGTTCAGCAGCAACAGGTGCAACAAGTGCAACAGCAGGATCAGAAGGTTTTGGGGATTGAGGAACAGTTTGCTCAAATGGGAGTTGGTGTTGTGAAGCAGCAGGATGAGGGATTTGCTGTGATGTCTTCGCCGCCTCATCCTCCGGTTCCGACTACGCTTGCTACGCCGGTGATTGGTGTTCCGATTGGTTCTGCTGTGGCTGTTGGTGAATATCAGAATAGAGTTTTTTCTGATGATGAGAGATCTGATCATGGCGTGGCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGTTGTTCAACAGCCACCTGCTCAAACTCAGCAACAGCCACAACCACAACAACCTCCTCAATTTCAACAAAAGTCGAGTGGCGGTGGTGCTGATTTGCCTTCTCCTGATTCAGTTGCAAGTGATAATAGTAGTCTTTCAAATCCAGTGTCGCGCCAAAAACCTGTTATCTATCAAGAGCAAGTTCAGATTCAATCTGGAGCTACAAGGGTTCTAAGTGGCCCTGTGGATCCGAAACTCAATTTGTCTGATCCACAGGGTAGGATCCAATTGCAGCAACATGTACAGGACCCTGGATATTTACTGCAACAGCAATTCGAACTCCAGCAGCAACAGCAACAACAGCAATTCGAACTTCAGCAACATCAGCAACAGTTTGAACTCCAGCAGCAGCAACAACAGACTCAACAACAGCAGCAGCAGCAGCAGCCTCAACATCAACAACAGCATCCTCAACATCAACAACAGCAACAGCAGCCACAACAGCAGCAGCTTCAACAACAGCTTCAACATCAGCAGCAGCAGTTTATACACGGGGGACACTACATTCATCATAACCCTGCAATTCCTGCATACTATCCTGTATATCCTTCACAGCAACAGCCCCATCATCAGGTTTACTATGTTCCTGCAAGACAGCCACAAGCTTACAATCTTCCTGTGCAGCAGGCTAATCTAGGGGATTCTGCCACAACAATCTCTTCTAGTAGACCCCAAAACCCTCCAAACCCTACTACACTGGTTCAACCAAATACAGCTTACAACCCCATTAGAAATGCTCCCCTACCCAAAACGGAAATGACAGCAGCTGCTTACAGAGCTGCAGCTTCAGGCAACCCTCAATTTGTACAAGTTCCCACAGCCCAGCATCAGCAACAATATGTCACTTATTCTCAGATCCACCATCCTTCCCAATCCATGGCCCCTAATTCTGCTGCCCCTGCCAATTATGCTTATGAGTTTGCTGATCCTGCTCATGCTCAAATATACTACTCTCAGCCTATGGCGCCCACAATGCCTTCACAGTACCAGACCATGGCAGGTGCTACTATGATGCAGCCAGAAATTTCTGCGCAGCATCCATCAGATGGCATGAAGCAACAGATAAGAACCTCACAGCAGCTATAA 2283 0.488 MEAQPQPPTPSAPPPLSSVAPPPPHLNYPDSVDSSPRSRNNDSWDEPFPPASTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRIVVVERATSLAELSTRLSKTFLNGRAFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASVNSSIKPSRIRLFLFPTKPESTHSIPPQILDTSAKSDDWFLDALNGAGLLNRGFSDSASVNNLLGLDDDVAGNIIEPGIREPPEGVSQPGSFGKNLKQDVHSVPDSPMMETSSSFGSTSSSPSLANLPPIRVHVEDGSSGGVRVQQQQVQQVQQQDQKVLGIEEQFAQMGVGVVKQQDEGFAVMSSPPHPPVPTTLATPVIGVPIGSAVAVGEYQNRVFSDDERSDHGVAVGYRKPPTPQPQVVQQPPAQTQQQPQPQQPPQFQQKSSGGGADLPSPDSVASDNSSLSNPVSRQKPVIYQEQVQIQSGATRVLSGPVDPKLNLSDPQGRIQLQQHVQDPGYLLQQQFELQQQQQQQQFELQQHQQQFELQQQQQQTQQQQQQQQPQHQQQHPQHQQQQQQPQQQQLQQQLQHQQQQFIHGGHYIHHNPAIPAYYPVYPSQQQPHHQVYYVPARQPQAYNLPVQQANLGDSATTISSSRPQNPPNPTTLVQPNTAYNPIRNAPLPKTEMTAAAYRAAASGNPQFVQVPTAQHQQQYVTYSQIHHPSQSMAPNSAAPANYAYEFADPAHAQIYYSQPMAPTMPSQYQTMAGATMMQPEISAQHPSDGMKQQIRTSQQL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03497 760 MobiDBLite consensus disorder prediction 249 267 - -
Vifa3g03497 760 MobiDBLite consensus disorder prediction 1 49 - -
Vifa3g03497 760 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 74 161 - -
Vifa3g03497 760 SUPERFAMILY CAD & PB1 domains 70 169 - -
Vifa3g03497 760 SMART PB1_new 69 161 IPR000270 GO:0005515
Vifa3g03497 760 MobiDBLite consensus disorder prediction 614 639 - -
Vifa3g03497 760 MobiDBLite consensus disorder prediction 522 559 - -
Vifa3g03497 760 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g03497 760 CDD PB1_UP2 58 159 - -
Vifa3g03497 760 MobiDBLite consensus disorder prediction 224 267 - -
Vifa3g03497 760 MobiDBLite consensus disorder prediction 31 47 - -
Vifa3g03497 760 Pfam PB1 domain 70 160 IPR000270 GO:0005515
Vifa3g03497 760 MobiDBLite consensus disorder prediction 389 439 - -
Vifa3g03497 760 MobiDBLite consensus disorder prediction 363 439 - -
Vifa3g03497 760 ProSiteProfiles PB1 domain profile. 54 152 IPR000270 GO:0005515
Vifa3g03497 760 Coils Coil 504 524 - -
Vifa3g03497 760 PANTHER OS05G0427100 PROTEIN-RELATED 27 538 - -
Vifa3g03497 760 Gene3D - 74 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03497 Vifa-Chr3 1007544086 1007546574 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03497 51 231 MAP Kinase Kinase Kinase AT1G79570 34.783 8.31e-26 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03497 3 1007544086 1007546574 Vifa3g03497 3 1007544086 1007546574 ECH
Vifa3g03497 3 1007544086 1007546574 Vifa1g07154 1 1103938337 1103940710 ECH