Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03486 ATGACACTCCCATCTCATGAAGTTACCAATGGTGATGCTTCACTTGACTCTGGTCATAACCGTCTTCTTCAACTTGGTTACAAACAAGAACTGAATCGCGATCTCTCGGTGGTTTCAAACTTTGCTCTTTCATTTTCCATTATATCCGTGCTCACCGGTATCACCACCCTTTACAACACTGGGTTGAACTATGGTGGTCCAGTTTCTATGCAATATGGTTGGTTTTTGGCTTCTGCTTTCACCATGCTTGTTGCACTTTCAATGGCTGAAATTTGTTCGGCTTTTCCAACTTCTGGCGGTCTTTACTATTGGAGTGCCAAGCTCGCCGGTCCCAAATGGGCACCTTTTGCCTCCTGGATTACTGGATGGTTCAATATTATTGGCTTGTGGGCAGGGACAACAAGTGTAGATTTTTCACTTGCGCAACTCATTCAGGTCATCATTCTCCTTAGTACTGGTGGAAAAAATGGTGGTGGATATGTAGCATCTAAATATGTAGTTCTTGCTTTCCATGGTGGAATTTTGCTCCTTCATGGAATGGTAAACAGCCTCCCCATCTGTGTGTTATCGTTCTTAGGACAACTCGGTGCTATCTGGAATGTTTTAGGTGTTTTTGTGCTTATGATTCTCATTCCATCTGTTGCAACGGAAAGGGCTAGTACAAAGTTTGTTTTCACTCATTTCAACGCTGATAACGGAGATGGAATCAATAGCAGACCCTACATGTTTCTCATAGGACTTCTAATGAGTCAGTATACACTTACCGGCTATGATGCATCAGCTCATATGACAGAAGAAACTAAGGGTGCTGATGAGAATGGACCAAAAGGAATCATAAGTGCTGTTGGGATATCTGTTATTGTTGGTTGGGGTTACATAGTAGGTATTACCTACGCCGTTACTGACATCCCTTACCTTTTGAGTGAAAACAATGATGCTGGTGGGTATGCCATTGCTGAGATATTCTATCAAGCATTCAAAACAAGATATGGAAATGGAATTGGAGGTATTATTTGCTTAGGAATCGTCGCTGTCGCTATTTTTTTCTGCGGTATGGGTTCAGTTACCAGCAATTCAAGAATGGCTTATGCTTTCTCAAGAGACGGTGCCATGCCATTTTCGTCTTTGTGGCATAAAGTTAACAAGCAGGATGTTCCTATATATGCAGTTTGGCTTTCTGTTTTTATATCATTTTGCATGGCCTTAACGTCTCTTGGAAGTATAGTGGCATTTGAAGCCATGGTGTCCATAGCAGTGATTGATCTCTACATTGCTTATGCACTTCCTATATTCTTTAGGGTGACATTGGCAAGAAAGAACTTTGTTCCTGGTCCTTTCAACTTGGGCCGATATGGGATCGTTGTTGGTTGGATTGCAGTTATTTGGGTGGTGATCATATCTATACTATTCTCATTGCCAGTTTCATACCCAATAACAATTGAGACACTTAACTACACACCTGTTGCACTTGGATGTTTGATCACTCTTGTACTTTCTTACTGGTTAGTCAGTGGTAGGCATTGGTTTAAAGGACCTATAACCAATTTACAACACTGA 1557 0.4143 MTLPSHEVTNGDASLDSGHNRLLQLGYKQELNRDLSVVSNFALSFSIISVLTGITTLYNTGLNYGGPVSMQYGWFLASAFTMLVALSMAEICSAFPTSGGLYYWSAKLAGPKWAPFASWITGWFNIIGLWAGTTSVDFSLAQLIQVIILLSTGGKNGGGYVASKYVVLAFHGGILLLHGMVNSLPICVLSFLGQLGAIWNVLGVFVLMILIPSVATERASTKFVFTHFNADNGDGINSRPYMFLIGLLMSQYTLTGYDASAHMTEETKGADENGPKGIISAVGISVIVGWGYIVGITYAVTDIPYLLSENNDAGGYAIAEIFYQAFKTRYGNGIGGIICLGIVAVAIFFCGMGSVTSNSRMAYAFSRDGAMPFSSLWHKVNKQDVPIYAVWLSVFISFCMALTSLGSIVAFEAMVSIAVIDLYIAYALPIFFRVTLARKNFVPGPFNLGRYGIVVGWIAVIWVVIISILFSLPVSYPITIETLNYTPVALGCLITLVLSYWLVSGRHWFKGPITNLQH 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03486 518 PIRSF AA_transporter 20 512 - -
Vifa3g03486 518 NCBIfam amino acid permease 23 512 IPR004756 GO:0006865|GO:0016020
Vifa3g03486 518 FunFam Amino-acid permease BAT1 29 508 - -
Vifa3g03486 518 Gene3D Amino acid/polyamine transporter I 30 508 - -
Vifa3g03486 518 Pfam Amino acid permease 35 491 IPR002293 GO:0016020|GO:0022857|GO:0055085
Vifa3g03486 518 PANTHER AMINO-ACID PERMEASE BAT1 13 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03486 Vifa-Chr3 1004506244 1004508623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03486 82 516 Organic Solute Cotransporters AT2G01170 75.862 0.0 653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03486 3 1004506244 1004508623 Vifa3g03486 3 1004506244 1004508623 ECH