Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03481 ATGCATAACAAGGACGTTTGTTCTCCCTCATCTCAAAGCGGATTCGGCGTCCACCTCAATTCCAACGCCGGCGCGTTTGCTTCGTTGTACTCTGTTCTGACTAACGAGCTCTCCGGAAACTGCAGCAATGGCGGAGGAGCATCAGCATCGCTTTATCCGTACTCTGACTCTGGAACTGATTACGACTCGTGCGTGAACGTGATACAGAAGCATCAGGATATGGTGAATCGTCACAGTATGTGTCTCAGTCGCTTAGTGGAGACATCCAAAGAGGTTGAAGCTCTTCAGCAAGAGAACGGACAGCTCCGTGCGGTGAACAAGGAGTTGCAGAAGAATCTGAACCTCCTCGTTCAGGCTTCGCTGGAGAATCGATTTGGCGGTGGCGACTCCTCCATCCAGACACATTCTATTCCATTTGATGCTTTGCACAGTTTCCGTTGTTTGAATCTTGGCGATGGAAAAGAAAACTGTGCTGATTGGAATACCAATAACATCAATCATAATAACAAGGAGCTTCTGGAAGCTTCGGATGAGAGTCCAACGAGTGTGATAGACAATAACGGTGTTGAAACGGAGAGGTTCTCGCTTCCGAAAAGCATTTCTGTGAGATCCAATGGCTACTTGAAGATCGCTCAGCCTCCCGCCGTCGTAACTAACAATAATGCTTGCCGCACCAAGGGCGGTACCCGCTCCCGCGCTTCTTCCACTCAACCAGATCAAGTTCAAAAAGTATATGTGAGAGGAGGGCAGAAAGAGGAAGAGCCTCTTGAGATGACTGTGTATAATCAGGGGATGTTCAAAACTGAATTGTGTAACAAATGGCAGGAAACTGGCGCATGCCCTTACAGTGATCACTGCCAATTCGCTCATGGTATTGGGGAGCTTCGCCCGGTGATTCGCCACCCACGCTACAAAACTGAGGTATGTAGGATGGTTCTTGCTGGGGTTGTTTGTCCCTATGGCCATAGATGTCATTTCCGTCATGCACTTACTGAGCAAGAGAAAGCTATATCACAATCTACGCCCAGATCAAGGAAGCTGGAAAGATAA 1050 0.4829 MHNKDVCSPSSQSGFGVHLNSNAGAFASLYSVLTNELSGNCSNGGGASASLYPYSDSGTDYDSCVNVIQKHQDMVNRHSMCLSRLVETSKEVEALQQENGQLRAVNKELQKNLNLLVQASLENRFGGGDSSIQTHSIPFDALHSFRCLNLGDGKENCADWNTNNINHNNKELLEASDESPTSVIDNNGVETERFSLPKSISVRSNGYLKIAQPPAVVTNNNACRTKGGTRSRASSTQPDQVQKVYVRGGQKEEEPLEMTVYNQGMFKTELCNKWQETGACPYSDHCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAISQSTPRSRKLER 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03481 349 SUPERFAMILY CCCH zinc finger 262 297 IPR036855 GO:0046872
Vifa3g03481 349 ProSiteProfiles Zinc finger C3H1-type profile. 303 331 IPR000571 GO:0046872
Vifa3g03481 349 FunFam zinc finger CCCH domain-containing protein 15-like 259 298 - -
Vifa3g03481 349 SUPERFAMILY CCCH zinc finger 299 333 IPR036855 GO:0046872
Vifa3g03481 349 ProSiteProfiles Zinc finger C3H1-type profile. 265 293 IPR000571 GO:0046872
Vifa3g03481 349 PANTHER CCCH ZINC FINGER/TIS11-RELATED 71 339 IPR045877 GO:0003729
Vifa3g03481 349 FunFam Zinc finger protein 36, C3H1 type-like 1 299 335 - -
Vifa3g03481 349 Gene3D - 259 298 - -
Vifa3g03481 349 Gene3D - 299 335 - -
Vifa3g03481 349 Coils Coil 85 112 - -
Vifa3g03481 349 SMART c3hfinal6 265 292 IPR000571 GO:0046872
Vifa3g03481 349 SMART c3hfinal6 303 330 IPR000571 GO:0046872
Vifa3g03481 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 266 291 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03481 Vifa-Chr3 1003093851 1003095581 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03481 54 338 C3H Transcription Factor Family AT1G68200 49.833 7.17e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g03481 zf-CCCH 7.7e-11 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03481 3 1003093851 1003095581 Vifa3g03481 3 1003093851 1003095581 ECH