Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03466 ATGTTGCCCACTACTTCCATTCCCAAAACCCTAAAACCCTATCTTCCATTTCTCCCCATGAAGGACCGCCCCTCGCTGTCCTCCCATGGCGCCATCTACGTTCCTCCGCACCACCGTCTCCGCTCCGTCATCACCTCCGCTAACTCCCCCACTCCACACTCCGTCAAACTCCGCGAAAATCATATACCCACACCTACCACTCTTCAAACCCCCTTATCGGACAAGCGCTTCATTTCTGCTTACGACGACGTCGTTTCCGAAGTTGAAGTTCCTTCATTACCGAGTGGTTTCCCCAATGATATCATGCAGGAGTGGAAGCCAAAATTTACAATGCTGTTAAGTGATGAGAGTAAGCAAGAGTTGATTTCAAGGGAGAAAAAAGATAGGCGTGATTTTGATGAAATATCAGTTTTGGCAACTAGAATGGGCTTGTATAGTCATATGTATTCCAAGGTTGCTGTCTTCAGTAAGGTGCCACTTCCCAACTATAGATATGATTTGGACGAAAGGAGGCCTCAGAGGGAGGTGAGCATGCCTATCACCGTGTTCAGGCGGGTTGGTGCACATTTTGAGGAATACCTTAGTCGAAAGTCCAGGACAAACAAAAGCTTTTCAGATTTGTCAAGCAGTGACGGCAGTCTTGGTACAGATGAAGGGCCTTTTGAACAGCCTGAGCCGCTAGCATCCAGTAAGGCTGTTGTGGAGAAAATTCTCTGGCAGAGAAGCTTACAAATGCGGGTTGTGCAACAAGCTTGGAGTCATCTGAAGGAAAAAAGAATGCTAGAATTTCGTAGAAATCTCCCTGGTTATAAAGAGAAAGAAGCAATATTATCGGTCATATCAAAGAATCAGGTAGTCATCATTTCAGGCGAAACAGGTTGTGGAAAGACAACACAAATTCCTCAATTTATTCTGGAGTCTGAGATAGAATCAGTTCATGGGGCTGCTTGTAATATTATATGCACACAGCCCAGACGCATTTCAGCCATGTCTGTTTCTGAAAGGGTTGCTTCTGAGAGAGGGGAGAAATTGGGTGAATCTGTTGGATATAAAGTTCGACTGGAGGGAATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATCTTATTAAGAAGATTACTGTATGATAGAAACCTTAATGGTGTAACTCATGTTATTGTGGATGAAATTCATGAACGTGGGATGAATGAAGATTTTTTGCTTATTGTCCTGAAAGAACTCCTTCCCCGTCGGCCCGAACTCAAACTGATTTTGATGAGTGCTACCCTAGATGCAAAGCTCTTCTCTTCGTATTTTAATGGGGCTTCAATAGTGAATATATCGGGCTTTACACACCCTGTTAGAACTCTCTTTTTGGAGAGCATTCTTGAAACGACGGGCTATCGATTGACTCCTTCTAATCAAATTGATGATTATGGCCAAGAGAGGTTGTGGAAAATGAACAAACAGGCCCCAAGAAAGAGGAAAGGCCAAATTGCTTCTGCCGTTGAGGATGCAATTAGATCTGCTGATTTCAAAGATTACAGCCTTCAGACACAGGAGTCTTTGTCATGTTGGAATCCTGACTGTATTGGTTTTAATCTCATAGAATATATCCTGTGCAATATTTGTGAGGATGAAAGGCCTGGTGCTGTTTTGGTTTTCATGACTGGGTGGGATGATATCTTCTCTCTGAAAGAGAAGCTCCAAGCACATACTGTCTTGGGAGATCCAAACCGTGTTTTGTTGCTCACGTGTCATGGCTCAATGGCTAGTGCGGAGCAAGAAGTAATGTTTGAAAAGCCTGAAGATGGAGTGAGAAAAATAGTGCTAGCAACAAATATTGCTGAAACGAGTATCACAATAGATGATGTTGTTTTTGTTCTGGACTGTGGAAAAGCAAAAGAAACATCATATGATGCACTGAATAATGCGCCTTGTTTGCTTCCTACATGGATCTCGAAGGCTTCTGCTCATCAAAGAAGAGGAAGAGCTGGTCGTGTTCAACCTGGAGTGTGTTACCATCTCTATCCTAGATGTGTATATGATGGTTTTGCAGAGTACCAATTGCCAGAAATTTTGAGAACACCTTTGCAGTCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCCGACTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGATACTCACGGTACAAAATGCAGTTGAATATTTAAAAATAATTGGGGCTTTGGACGGGAATGAGAATCTGACTATTCTTGGACACTATTTGACGAAGTTTCCTATGGAACCCAAACTTGGCAAGATGCTTATATTAGGCGCTATCCTCAATTGTCTGGATCCTATATTAACTGTTGTTGCTGGTCTTAGTGTGAGAGATCCTTTTCTAACACCACTGGATAAAAAAGATCTTGCCGAGGCGGCAAAATCTCAATTCTCTGGTGCATACAGTGACCACCTAGCACTTGTACGCGCTTACGAGGGTTGGAAAGTTGCTGAGATAGACCTGGGTGGATATGAATATTGTTGGAAAAACTTTATTTCATTCCAATCCATGAAAGCTATTGATGCTCTTCGGAGGGAGTTCAAAGGCCTGCTTACAGATATTGGATTAGTCGATAGCAACACAACAAGCTGTAACACATGGAGCTATGATGTGAATCTTATCAGGGCAGTTATTTGCTATGGTCTATATCCTGGAATTTGTTCTGTGCTGGTATGCCTTTTTATATGA 2715 0.4273 MLPTTSIPKTLKPYLPFLPMKDRPSLSSHGAIYVPPHHRLRSVITSANSPTPHSVKLRENHIPTPTTLQTPLSDKRFISAYDDVVSEVEVPSLPSGFPNDIMQEWKPKFTMLLSDESKQELISREKKDRRDFDEISVLATRMGLYSHMYSKVAVFSKVPLPNYRYDLDERRPQREVSMPITVFRRVGAHFEEYLSRKSRTNKSFSDLSSSDGSLGTDEGPFEQPEPLASSKAVVEKILWQRSLQMRVVQQAWSHLKEKRMLEFRRNLPGYKEKEAILSVISKNQVVIISGETGCGKTTQIPQFILESEIESVHGAACNIICTQPRRISAMSVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLYDRNLNGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELKLILMSATLDAKLFSSYFNGASIVNISGFTHPVRTLFLESILETTGYRLTPSNQIDDYGQERLWKMNKQAPRKRKGQIASAVEDAIRSADFKDYSLQTQESLSCWNPDCIGFNLIEYILCNICEDERPGAVLVFMTGWDDIFSLKEKLQAHTVLGDPNRVLLLTCHGSMASAEQEVMFEKPEDGVRKIVLATNIAETSITIDDVVFVLDCGKAKETSYDALNNAPCLLPTWISKASAHQRRGRAGRVQPGVCYHLYPRCVYDGFAEYQLPEILRTPLQSLCLQIKSLRLGSISDFLSRALQSPEILTVQNAVEYLKIIGALDGNENLTILGHYLTKFPMEPKLGKMLILGAILNCLDPILTVVAGLSVRDPFLTPLDKKDLAEAAKSQFSGAYSDHLALVRAYEGWKVAEIDLGGYEYCWKNFISFQSMKAIDALRREFKGLLTDIGLVDSNTTSCNTWSYDVNLIRAVICYGLYPGICSVLVCLFI 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03466 904 Pfam Helicase conserved C-terminal domain 533 664 IPR001650 -
Vifa3g03466 904 MobiDBLite consensus disorder prediction 202 216 - -
Vifa3g03466 904 FunFam Putative ATP-dependent RNA helicase DHX36 707 811 - -
Vifa3g03466 904 CDD DEXHc_RHA-like 283 443 - -
Vifa3g03466 904 SMART helicmild6 559 665 IPR001650 -
Vifa3g03466 904 Pfam DEAD/DEAH box helicase 275 427 IPR011545 GO:0003676|GO:0005524
Vifa3g03466 904 FunFam DExH-box ATP-dependent RNA helicase DExH3 527 683 - -
Vifa3g03466 904 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 444 IPR014001 -
Vifa3g03466 904 FunFam DExH-box ATP-dependent RNA helicase DExH3 222 445 - -
Vifa3g03466 904 Gene3D - 227 445 IPR027417 -
Vifa3g03466 904 CDD SF2_C_RHA 522 673 - -
Vifa3g03466 904 SMART ha2_5 727 817 IPR007502 GO:0004386
Vifa3g03466 904 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 531 705 IPR001650 -
Vifa3g03466 904 SMART ultradead3 264 458 IPR014001 -
Vifa3g03466 904 Gene3D - 707 811 - -
Vifa3g03466 904 Pfam Helicase associated domain (HA2) 728 801 IPR007502 GO:0004386
Vifa3g03466 904 Gene3D - 530 683 IPR027417 -
Vifa3g03466 904 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 275 831 IPR027417 -
Vifa3g03466 904 PANTHER ATP-DEPENDENT RNA HELICASE 208 892 - -
Vifa3g03466 904 MobiDBLite consensus disorder prediction 202 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03466 Vifa-Chr3 993813411 993827830 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03466 3 993813411 993827830 Vifa3g03466 3 993813411 993827830 ECH