Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03461 ATGGCTGCTGTTACTAATTTTACATATTCAGCCTCTCCCTTTCTTGTAAGGTGTTGTTCTATGAAAGAAAATCATCATGAACAATTGAATGGTAACAGCAGCATAAGAATGAATGGGAGTTTTAGGTCTCCGATTAAAGTCGAATCACTCAGTCAAACAGCTGAAGCTGCACCTACAACTCTTGTCGAAAATGGTCAACGACAAAACATACCGACGAAGAAGCAGTTGGTCGATTCCCATCGTCAAGGTCTCATCGTCGGTGTTGGTTATAGACAAACCGTCGTCATTAGGTCCTATGAAGTCGGTGCTGATAAAACCGCAACACTTGAAAGCATCCTCAATCTTCTTCAGGAAACGGCATTGAATCATGTATGGATGTCTGGACTACTGAGTGATGGGTTTGGAGCAACACATGGAATGATGAAAAATGATCTCATTTGGGTTGTATCAAGAATGCAAGTTCTCATTGATTATTATCCCATCTGGGGAGAGGTACTTGAAATCGACACATGGGTTGGAGCATCGGGCAAGAACGGAATGCGACGCGACTGGCTCATAAGAAGTCAAGCCACGGGCCAAATTTTCGCTCGCGCAACAAGCACATGGGTGATGATGAACCGTACCACAAGACGCCTCTCCAAAATGCCACAAGAGGTGAGGGACGAACTCGCTCCTTGGTTTATATCAAACCAAGCAATAAAAGAAGACGCTCCTGAAAAAATCGTCAAATTGAACAAAGAGGCGAAATACACGAACTCCAATTTGAAGCCTAAGAGAAGTGACTTAGACATGAACCAACATGTTAATAATGTAAAATATCTAAGATGGATGCTAGAGACTATACCTGATCAAATTCTAGAGAGTCACCAATTATCTGGAATCATATTAGAATATAGAAGGGAATGCGGAAGTTCAGATATAGTTGAATCACTATGTGAACCTGAAGAAGATGAAATAGTACTTAATGGTATTATTGAGCCAGATTATTGCAAAAATTTGATTAATGGATTATCATTGGCATCATCAGATATTATAAATGGTGGTGGAGTTTTGAGCTACCTTGAGCATAGGCCAATAAAGTATACACATCTTTTACAAGCTAAGGGAGAAAAACAAAATGAAGAAATTGTTAGAGGAAAAACTACATGGAAGAGGAAATTCACTACATGTCCATTTTCTACATAG 1185 0.3983 MAAVTNFTYSASPFLVRCCSMKENHHEQLNGNSSIRMNGSFRSPIKVESLSQTAEAAPTTLVENGQRQNIPTKKQLVDSHRQGLIVGVGYRQTVVIRSYEVGADKTATLESILNLLQETALNHVWMSGLLSDGFGATHGMMKNDLIWVVSRMQVLIDYYPIWGEVLEIDTWVGASGKNGMRRDWLIRSQATGQIFARATSTWVMMNRTTRRLSKMPQEVRDELAPWFISNQAIKEDAPEKIVKLNKEAKYTNSNLKPKRSDLDMNQHVNNVKYLRWMLETIPDQILESHQLSGIILEYRRECGSSDIVESLCEPEEDEIVLNGIIEPDYCKNLINGLSLASSDIINGGGVLSYLEHRPIKYTHLLQAKGEKQNEEIVRGKTTWKRKFTTCPFST 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03461 394 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 88 235 IPR029069 -
Vifa3g03461 394 CDD 4HBT 90 206 - -
Vifa3g03461 394 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 251 383 IPR029069 -
Vifa3g03461 394 Pfam Acyl-ACP thioesterase 89 384 IPR002864 GO:0006633|GO:0016790
Vifa3g03461 394 Gene3D Hotdog Thioesterase 87 389 - -
Vifa3g03461 394 FunFam Acyl-[acyl-carrier-protein] hydrolase 83 389 - -
Vifa3g03461 394 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 28 387 IPR045023 GO:0006633|GO:0016297
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03461 Vifa-Chr3 990207992 990209942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03461 76 394 Acyl Lipid Metabolism Gene Families AT1G08510 45.031 3.56e-93 284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03461 3 990207992 990209942 Vifa3g03461 3 990207992 990209942 ECH