Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03460 ATGGCACCGGCAACGAAAACGAATGGAGATAACTCTCACATAGTGGAAGCGTTGAATCTCCTCCGGAGCAGAATCTGCGACACCGGTTTCATCTTCAAAGACTCTCCAGACGGAAACTACAGCAAGTTGAAATTCATGATTTCGAGTTCAGTAGCGGAGGCGTGTAACAATTCCATTCTTCTCCTCGGTCCACGTGGCTCCGGGAAGCTTGCGGTTTTGGATCTTGTTCTTCAGGATTTGTTGATTCAGTATCCAGATTCCATTTCAGTGGTTAGGTTGAGTGGGCTTTTACATTGTGATGACATCTCTGCATTCAAGGAAATAGCTAGACAGTTATGCATGGAACATCAATTGCTATTCTCAAAAGCGGCATCATTTGATGACAACTCCCAATTTATGGTAGCTGTGCTAAAAGAATGCGGACTAGCACATAAATCTGTAATTTTCATTTTGGATGAGTTTGACCTCTTTGCTCAGGGTAAACAGCGGTTACTTTATAGCTTGCTAGATGCAATGCAGTCGGTATCATCACAAGCTGTAGTAGTAGGCATTAGTTGCCGTCTGGATGCAGATCAGCTACTGGAGAAAAGAGTACGATCTCGTTTTTCACATAGAAAGCTGTTGTTCTTACCACCTTCAATAGAAGATTCACAAAGATTATTGGTGCATATGCTGACATTGCCAATAGATTCAAGCCTTCCTTCTGATTATGCTGTTCAATTTAATAAAAAAGTTCAAAATATTATAGAAGACAAAAAGTTCAAAGAAATCTTCACTAACTATTTGAATTTTGACTCCTCTGTCAAACATTTGTTGAGGTTCCTGTTCTATGCAGTCTCTCATATGGATATGCAGACTGGGTTTCTGTCCAGGGAAAACTTTGAAACTGCGTATTCAAGCATCCAGAGACAGCCCAAACTAGAATGTTTAAGAAATTGTTCCATTTTGGAACTATATATTTTGGTATGCATGAAGAAATTGGAAGTTAAAGAGAAAAGTTTATGTAACTTCAATGCAGTAATGAAAGAGTATAAAAACATACATGATTCTTTCCAGACTTCTGATTACTATGCACGGAACGTCTGTTTAAGGGCATTTGAACACCTTATACACCGTGAACTAATATGTTTCACAGACAATAGAGGACATAGTTTATCTGTTGAATTTCGTCCTGTAAAGCTATTAATTTCATCTGCTGAACTGTATCAAGGACTAAAGGCTTATCATTCTTGCCCCGCTATCCTTCAAAAGTTAATAGAACGTGACGGCTAA 1272 0.3892 MAPATKTNGDNSHIVEALNLLRSRICDTGFIFKDSPDGNYSKLKFMISSSVAEACNNSILLLGPRGSGKLAVLDLVLQDLLIQYPDSISVVRLSGLLHCDDISAFKEIARQLCMEHQLLFSKAASFDDNSQFMVAVLKECGLAHKSVIFILDEFDLFAQGKQRLLYSLLDAMQSVSSQAVVVGISCRLDADQLLEKRVRSRFSHRKLLFLPPSIEDSQRLLVHMLTLPIDSSLPSDYAVQFNKKVQNIIEDKKFKEIFTNYLNFDSSVKHLLRFLFYAVSHMDMQTGFLSRENFETAYSSIQRQPKLECLRNCSILELYILVCMKKLEVKEKSLCNFNAVMKEYKNIHDSFQTSDYYARNVCLRAFEHLIHRELICFTDNRGHSLSVEFRPVKLLISSAELYQGLKAYHSCPAILQKLIERDG 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03460 423 Pfam AAA ATPase domain 41 176 IPR041664 -
Vifa3g03460 423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 235 IPR027417 -
Vifa3g03460 423 Pfam Origin recognition complex (ORC) subunit 4 C-terminus 220 403 IPR032705 -
Vifa3g03460 423 Gene3D - 37 211 IPR027417 -
Vifa3g03460 423 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 4 9 421 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
Vifa3g03460 423 FunFam Origin of replication complex subunit 4 37 211 - -
Vifa3g03460 423 PIRSF ORC4 1 422 IPR016527 GO:0000808|GO:0003677|GO:0005634|GO:0006260
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03460 9 420 Core DNA Replication Machinery Family AT2G01120 63.270 0.0 547
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03460 3 990202399 990206916 Vifa3g03460 3 990202399 990206916 ECH