Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03444 ATGGCTTCACGGAGAATCGTTTCGTCTTTGATTCGATCCTCACTCCGTCCATCTCCATCCAGATCCTCCATCACCGCCTCAACATCCAGACTTCGTGCTTCTCCTTCCCCGTCCGCTTACTTTCTCAACCGTGTAACGGAATATGCCACAGCTGCTGCTGCTGCAGCTCCCGCTCCTCCTCCGGCTAGGAAAATTCCCGCTGCTGATGGAAAGATTACCGATGAACGTACAGGGAAAGGTTCCATTGGACATATTTGTGCGATCATTGGTGCTGTAGTGGATGTGAGATTCGAAGATGGAGTGCCTCCGATCCTTACCGCGCTTGAAGTTCTTGAAGGTAATATACGGATTGTGTTGGAGGTTGCTCAACATTTAGGCCAGGGTGTTGTTAGAACTATTGCTATGGAAGCTACTGAAGGTGTTGTTAGAGGATGGCGCGTGCTCAATACCGGTTCTCCCATCAATGTTCCCGTTGGCAGGGCTACCCTTGGACGAATCATGAATGTTATCGGAGAACCTATCGACCACAAAGGAGAATTCAAAACCGAGCATTATTTGCCCATTCATAGAGAGGCTCCTGCTTTTGTTGAGCAAGCAACTGAACAGCAGATCCTTGTTACTGGTATTAAGGTTGTTGATTTGCTTGCACCATACCAAAGAGGAGGAAAGATTGGGTTGTTTGGTGGTGCTGGTGTAGGAAAGACTGTGCTTATTATGGAGCTTATCAACAATGTTGCTAAGGCTCATGGTGGTTTCTCGGTTTTTGCCGGTGTTGGAGAAAGAACCCGAGAGGGTAATGATTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGTTGGATGATAAGCAGAGTGAAAGCAAATGTGCTCTTGTGTATGGTCAAATGAACGAGCCACCTGGTTCTCGTGCCCGTGTTGGACTTACTGGACTCACTGTCGCCGAACACTTCCGTGATGCTGAAGGACAAGACGTGCTGCTTTTCATCGACAACATTTTCCGCTTTACTCAAGCAAACTCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTTGGTTACCAACCAACATTGTCTACTGATCTTGGAGATCTTCAAGAGCGTATTACAACCACCAAAAAGGGTTCAATTACCTCTGTCCAAGCTATCTATGTGCCTGCTGATGATTTGACAGATCCTGCTCCTGCTACCACCTTTGCTCATTTGGATGCTACAACAGTGTTGTCGAGACAGATCTCCGAGCTTGGTATCTATCCTGCTGTCGATCCATTGGATTCCACATCTCAAGTTTTCACTGGTGCCCCTGGCAAATATGTTGACTTGAAGGAGAACATTGCTAGTTTCCAGGGTGTGTTGGATGGAAAATACGACGCCCTTTCAGAGCAGGCATTTTACATGGTTGGTGGTATTGAAGAGGTCATTGCAAAGGCTGAGAAGATTGCTAAAGAAAATGCATAA 1461 0.4668 MASRRIVSSLIRSSLRPSPSRSSITASTSRLRASPSPSAYFLNRVTEYATAAAAAAPAPPPARKIPAADGKITDERTGKGSIGHICAIIGAVVDVRFEDGVPPILTALEVLEGNIRIVLEVAQHLGQGVVRTIAMEATEGVVRGWRVLNTGSPINVPVGRATLGRIMNVIGEPIDHKGEFKTEHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLDDKQSESKCALVYGQMNEPPGSRARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLSTDLGDLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSQVFTGAPGKYVDLKENIASFQGVLDGKYDALSEQAFYMVGGIEEVIAKAEKIAKENA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03444 486 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 208 429 IPR000194 GO:0005524
Vifa3g03444 486 Pfam ATP synthase F1 beta subunit 1 44 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Vifa3g03444 486 Gene3D - 70 153 - -
Vifa3g03444 486 FunFam ATP synthase subunit beta 154 431 - -
Vifa3g03444 486 Pfam ATP synthase alpha/beta family, beta-barrel domain 85 151 IPR004100 GO:0046034|GO:1902600
Vifa3g03444 486 CDD F1-ATPase_beta_CD 155 431 - -
Vifa3g03444 486 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 428 482 - -
Vifa3g03444 486 PANTHER ATP SYNTHASE 71 431 - -
Vifa3g03444 486 ProSitePatterns ATP synthase alpha and beta subunits signature. 420 429 IPR020003 GO:0005524
Vifa3g03444 486 FunFam ATP synthase subunit beta 71 153 - -
Vifa3g03444 486 Gene3D ATP synthase, F1 beta subunit 1 48 IPR042079 -
Vifa3g03444 486 Gene3D - 429 486 IPR024034 -
Vifa3g03444 486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 432 IPR027417 -
Vifa3g03444 486 SMART AAA_5 220 414 IPR003593 GO:0016887
Vifa3g03444 486 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 79 153 IPR036121 GO:0046034|GO:1902600
Vifa3g03444 486 NCBIfam F0F1 ATP synthase subunit beta 82 431 IPR005722 GO:0015986|GO:0045261|GO:0046933
Vifa3g03444 486 CDD ATP-synt_F1_beta_N 81 154 - -
Vifa3g03444 486 Gene3D - 154 428 IPR027417 -
Vifa3g03444 486 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03444 Vifa-Chr3 987269525 987272477 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03444 135 445 Primary Pumps ATPases(2) AT1G20260 27.879 3.63e-26 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03444 3 987269525 987272477 Vifa3g03444 3 987269525 987272477 ECH