Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03440 ATGGCCGCGTCGCAGTCTTCCTCCGCCGCGGGCAACACCAACATCATGCTCGCCATCTTCGAGAAGAAAACAAACACCGTAGATCTCTACCGTCCCCTCCGCAACTACATCACCTTCCATTACTCCGAACGCGAGGCACAAAACCTCGAAGACGATCTCCAAACCCTAAAACAGCTCCGTTCCGATATCGAGCGTCACTCCGATCCGTCTCTCCCCGCACGCCGTGACCTTTTTATAACCTACTTCAAAGCCCTCTGTCAAGTCGAAACGCGGTTCCCGATCTCGCCTGAACCGGAGCACGTCAACGCGCTCACGTTTGTTTGGTTTGATGCTTTCAAATCGAAGCTGAAAGCCTCTCAGCAGAATATTCATCTCGAGAAAGGATCTGTGTTGTTTAATTTGGGCGCGGTTTATAGTCAGATTGGATTGTCGTTTGATCGGAATACAGTTGATGGACGGAGGCAGGCCTCACATGCATTTATGGGGGCCGCTGGCTCGTTCGCATTTCTTAGAGATAATGCCTCTGTGAAAATCTCGGTTGGAAGTTCCACAACGCTTGATTTGTCTGCTGAGTGTGCTGGAATGTTGGAGAAGCTTATGCTTGCTCAGGCTCAGGAGTGTGTCTTTGAAAACACCATTGCCAAAGGAAGCACACCTGGTGTTTGTGCCAAGATCTCTAGGCAGGTTGGGCTGTATTATGAGGAAGCATTGGCTGCACTGAATGTTGCACCTTTAAACCAGCATTTCGATAAGTCTTGGATAGTTCATGTACAGTTGAAAGCAGCTATTTTCTATGCAGAAGCTTGTTATAGGTATGGATTAGAGCTGCATGAGAAAGAGGAAATAGCAGAGGAGATATCGCGGCTGAAGAGTGCTGTTAGTGTGCTAACTGAAGCAAAGAAAAACTCCAGGGGTGCTGCAGCGCAGCTTCCTGATGCTATTAACAAGTTAGAGGGTAATATTAATAGAAACCTTGAAAGGGCTGTCAAGGAGAATGATAGAGTTTACTTGATGAGAGTGCCTTCTCATAGTTCATTGTCACCTCTTCCGGCGTTTGCTATGGTGAAACCGATGGTCATGAATGAGGTTCTGGATGCGAGTAAAGAGAAAATGTTTACAAGTCTTGTTCCTGACAATAGTGCCAAGGCTCTCTCCAGGTACACTGAAATGGTTGATCACATTATAAGAACACAGGCTGAGAAGTTGCAGCAAGCTAGCGAGCTTACCCGAGTTAGGCTTAAGGAAATGGAATTGCCTGATTCTATTCTTGCTTTGGAAGGAAATTTTACTCTACCAACAAATCTCAAAGAAGATGTAGAGGCTGTGCAGATCAGTGGGGGACCTGCTGGTTTGGAAGCAGAGTTGCAGCAGCTTAAGGATCTAAGGAGGGTGAATCAAGAATTGTTGGTTCAGACTGAGGAGCTGTTGCAGAAGGAATCGAGAGAAGATGCTCAATTTAGAAGTCAATTTGGCACCAAATGGACTAGGCCTCAGTCAAGCACTTTGACAAAGAACTTATTGGATAGACTGAATAGGTTTGCAGGTAACTTGAAGCAAGCTGCTGATAGTGATGCTAGGATCGAGCGTTCAGTTAGAGAACACTCAGCACTCATGGCAATCCTTGATGCCCGTCCCATTGAATCTGCACTTCCAAGCCTAGCAAGGCCAATTATGTCTTTTGATCAAAATGAAGATGCTATTGTAGGGTCTCTCAAACAAAGCTTGAGGCAACTGGAAACTCTAGGAGCTCAAAGGGCTGGTCTTGAAGACATGCTTAGAGAGATGAAAAGAAAGGATGATATATTACCGAAGTTGATGACATCCACCGGTTCTTATGAGGATCTTTTTAAAAAGGAGTTAGCAAAATATGACCATATCTGTGAAGAAATAGGTCAAAATATTGAAGCACAAGAGCAACTGTTGCTGCAAATCCAGGCTCAAAATGATGAATTTTCAGTTCTTTTCAATCTTGAAGATTACAAAGCTTCACGTGAAAAATCCTACAAGCAGATAGAAGCTGCCATAGCAAAGTTTCGAGAAATAAAGGACAACATCAATGAAGGGTTAAAATTCTATGTTACCCTGCAGGATGCCATCACAAATGTAAAGCAGCAGAGCAATGACTTTGTAATGACGAGGAACATCCAGTGCAGGGAAATGATCGAAGATGTTCAGAGACAAGTAGCTGGTCTGAGTTTCCAGGATAAAAACTCAGGTGGATTTAACAACAATTATCCTCCGGTGGGAAACCAAAATCAAAGACCAAATACACAAACAGATCCTCGTCATCAAACACCTTATTATCAGCAATCTGAGCAGCCACCAGTTTCTTCCTATGGTCATCCGCCTCCTTCATATGGCTCGTCACATCATCAGCCTCCTCCTCCATACCAAATTCCACCATCTTCAGCTGCTGCCCCATACCCACCTCCTCAGGTCCATCAGCAGCCACCACCAAACCATGATTATGGCCAACCTGCATATCCCGGATGGCGTGGTCAATACTACAATGCACACACACATCCACAACAACAACCACAACAGCCTGGTTCTGGTCCTCGGCCTCCTTATACCATTCCATCTCCATATCCTCCACCTCACCAAGGTGGCGGCTATTATAAGCAGCAATAG 2631 0.4527 MAASQSSSAAGNTNIMLAIFEKKTNTVDLYRPLRNYITFHYSEREAQNLEDDLQTLKQLRSDIERHSDPSLPARRDLFITYFKALCQVETRFPISPEPEHVNALTFVWFDAFKSKLKASQQNIHLEKGSVLFNLGAVYSQIGLSFDRNTVDGRRQASHAFMGAAGSFAFLRDNASVKISVGSSTTLDLSAECAGMLEKLMLAQAQECVFENTIAKGSTPGVCAKISRQVGLYYEEALAALNVAPLNQHFDKSWIVHVQLKAAIFYAEACYRYGLELHEKEEIAEEISRLKSAVSVLTEAKKNSRGAAAQLPDAINKLEGNINRNLERAVKENDRVYLMRVPSHSSLSPLPAFAMVKPMVMNEVLDASKEKMFTSLVPDNSAKALSRYTEMVDHIIRTQAEKLQQASELTRVRLKEMELPDSILALEGNFTLPTNLKEDVEAVQISGGPAGLEAELQQLKDLRRVNQELLVQTEELLQKESREDAQFRSQFGTKWTRPQSSTLTKNLLDRLNRFAGNLKQAADSDARIERSVREHSALMAILDARPIESALPSLARPIMSFDQNEDAIVGSLKQSLRQLETLGAQRAGLEDMLREMKRKDDILPKLMTSTGSYEDLFKKELAKYDHICEEIGQNIEAQEQLLLQIQAQNDEFSVLFNLEDYKASREKSYKQIEAAIAKFREIKDNINEGLKFYVTLQDAITNVKQQSNDFVMTRNIQCREMIEDVQRQVAGLSFQDKNSGGFNNNYPPVGNQNQRPNTQTDPRHQTPYYQQSEQPPVSSYGHPPPSYGSSHHQPPPPYQIPPSSAAAPYPPPQVHQQPPPNHDYGQPAYPGWRGQYYNAHTHPQQQPQQPGSGPRPPYTIPSPYPPPHQGGGYYKQQ 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03440 876 Gene3D alix/aip1 like domains 423 704 - -
Vifa3g03440 876 ProSiteProfiles BRO1 domain profile. 14 409 IPR004328 -
Vifa3g03440 876 Gene3D alix/aip1 in complex with the ypdl late domain 377 655 - -
Vifa3g03440 876 CDD BRO1_Alix_like_1 16 371 - -
Vifa3g03440 876 Gene3D alix/aip1 like domains 12 376 IPR038499 -
Vifa3g03440 876 Coils Coil 279 299 - -
Vifa3g03440 876 CDD V_Alix_like_1 377 713 - -
Vifa3g03440 876 SMART BRO1_2 15 399 IPR004328 -
Vifa3g03440 876 Coils Coil 39 66 - -
Vifa3g03440 876 MobiDBLite consensus disorder prediction 733 776 - -
Vifa3g03440 876 MobiDBLite consensus disorder prediction 777 817 - -
Vifa3g03440 876 MobiDBLite consensus disorder prediction 848 867 - -
Vifa3g03440 876 Pfam BRO1-like domain 16 394 IPR004328 -
Vifa3g03440 876 Pfam ALIX V-shaped domain binding to HIV 431 715 IPR025304 GO:0005515
Vifa3g03440 876 Coils Coil 578 598 - -
Vifa3g03440 876 MobiDBLite consensus disorder prediction 733 876 - -
Vifa3g03440 876 Coils Coil 627 647 - -
Vifa3g03440 876 PANTHER PCD6 INTERACTING PROTEIN-RELATED 15 876 - -
Vifa3g03440 876 Coils Coil 451 478 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03440 3 985739505 985747157 Vifa3g03440 3 985739505 985747157 ECH