Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03439 ATGAACAATTCAAGCGGCGAAGAAAAAGAAGCAACAGCATTGTCAAGAGCTGCAAAATCCACTGACGAACTTTACCTTCTCCGAGACACCTATTTCCCTCAAAACCCTCACGATAGAATCTCCAAATTGCAACAACTTTCCGATCTCATTCTCAATCTCCTCGATTCCGTTCCTCCAGAAGAAAGAAAATCACCTACGCAACGGGCAGTGTTTGAATATCTTAAAGGGAAAGTGTTAGATGTATATCCTGAATATAAGAAAGAAGCTGAGGATCATTTATCAAAAGCTGTTAAGTTGAACCCGTCTTATGCAGATGCTTGGCTATGTTTAGGAAACTGTATTTGGAAAAAAGGAGATTTATCTGCAGCAAAGAACTGCCTCAATCTTGCATTAAACAAGGGTCCTGACAAAAAGATTCTTTGCCAATTATCAATGCTTAAAAGAAAAATGTCTCAAGCACCCGAGAATGGTGGAAAGTTAGGAAAGTGGAAAAAGAAAATAAATTGTGCGGATAATCAAGCAGAACTTGTTGATGAAAGCATTCAACATGCCAAGGAAGCAATTGCTTTGGATGTCAAGGATGGGGAATCTTGGTATAATCTTGGAAATGCATACCTTACGAGTTTTTTTGTCACTGGAGGTTTGGATCATACCAGACTTTCACATTCTTTAAAAGCATATCAAAATGCTGAGAAAGATGAAGGGATCAAGTCCAATCCAGACTTTTACTTTAATAGTGCCACTGCTAACAAATATCTAGAGAACTATGAGAGGGCCCTTAGTGGATTTGAGGCTGCTGCTTTGAAGGATCCAGGTCTCAATGCTGCAGAGGAGGTTCAGAAAATTGTCAATATACTTGACAAGGTGGACAATCTTTTGAGGGTACATGTAAGAGCTAAGCGAATCGCCGCTTTAGCAGCATCATTGGCTGCTGTAAATATGAAATCGCCATACAGAACAGTTACCATAGACCTTCTGTCAGAAGGTCTTAATAGAGCTCTAGCAGTAGATGGGAAGGTGTTATTCTATATTAGTAGTGACGGTGTTGCTCCACTATACTATTTGCTCTGTGATTCAAACCAAAATTGCTTTGTTCTCTCAGTTTATGGTGTACGCGAAGACGTGATTAAAGGAGGAGAGCAGCTCACATTGCTCGATCCTTACTTTTGCGACGTTGATGTTACCTGGAAGGAGAAGCATTACCAGTTCAAATCTATACGCGTGGATTTCTATGAGCAAATGCTTGTTAATGGAAAAGCTCTGACTCCTCAACAAGCTATTCGTTCATCGATAATCGCACAACATAAACCATGA 1314 0.3995 MNNSSGEEKEATALSRAAKSTDELYLLRDTYFPQNPHDRISKLQQLSDLILNLLDSVPPEERKSPTQRAVFEYLKGKVLDVYPEYKKEAEDHLSKAVKLNPSYADAWLCLGNCIWKKGDLSAAKNCLNLALNKGPDKKILCQLSMLKRKMSQAPENGGKLGKWKKKINCADNQAELVDESIQHAKEAIALDVKDGESWYNLGNAYLTSFFVTGGLDHTRLSHSLKAYQNAEKDEGIKSNPDFYFNSATANKYLENYERALSGFEAAALKDPGLNAAEEVQKIVNILDKVDNLLRVHVRAKRIAALAASLAAVNMKSPYRTVTIDLLSEGLNRALAVDGKVLFYISSDGVAPLYYLLCDSNQNCFVLSVYGVREDVIKGGEQLTLLDPYFCDVDVTWKEKHYQFKSIRVDFYEQMLVNGKALTPQQAIRSSIIAQHKP 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03439 437 SUPERFAMILY TPR-like 76 264 IPR011990 GO:0005515
Vifa3g03439 437 Gene3D - 297 436 IPR038645 -
Vifa3g03439 437 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 44 307 - -
Vifa3g03439 437 SMART tpr_5 69 103 IPR019734 GO:0005515
Vifa3g03439 437 SMART tpr_5 104 137 IPR019734 GO:0005515
Vifa3g03439 437 SMART tpr_5 240 273 IPR019734 GO:0005515
Vifa3g03439 437 Pfam Tetratricopeptide repeat 88 136 - -
Vifa3g03439 437 Pfam Tetratricopeptide repeat protein 5 OB fold domain 318 429 IPR032076 -
Vifa3g03439 437 Gene3D Tetratricopeptide repeat domain 5 296 IPR011990 GO:0005515
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03439 3 985647377 985654021 Vifa3g03439 3 985647377 985654021 ECH