Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03406 ATGACACTCTCGCGATTATTCAGAAAATTCCCCAATTTTGTCCAAGTCTCAAAATCTTGTTACCCAATTTCTTCAACACTCTCAGCAAGTTCAAATTTTGATCACCATCATCCAAACCCCACCATCCAATCCATCCAAAACCCATCCGCCTCTCTCAAATTCAACATTTTTTCACTTCACACATCCCGTCTCAAAAAACCCACCACCCCCAACCCAGACGCCGAAACAATCTGCAAAATCCTCTCCACCGCACCAGATTCACCCCTCGACGTCTCCCTCCGCAACTTCCCGGTGGAGGTATCGCCGGAGCTCGTTGCTGATGTCTTAAACAAGCTCAGCAATGCTGGTATCCTCGCACTTTCGTTCTTCCGTTGGGCCGAGAAACAAAAAGGATTCAAACACAGTACAGGGAGCTTCCATGCTTTGATTGAAGCATTGGGTAAGATCAAACAGTTTAAGATGATTTGGAATTTGGTAGATGACATGAAACAACTAAAGTTGCTGAATGGTGACACTTTTGCTCTAATCGCTCGTAGATATGTTAGAGCTAGGATCGTTAATGAAGCATTGAAGACGTTTGAGAGAATGGAAAGATACGGATTGAAGCCCAAGATATCGGATTTCAATAAGTTAATTGATGTTTTGTGTAAGTCCAAGTTTCATGTTGAGAAAGCACAGGAACTGTTTGATAAAATGCGGCAATGGGATTTGGAGCCTGATTTGAAGACTTATACTATTTTGTTGGAAGGTTGGAGTCAGCAACAGAATTTGTTGAAGGTTAATGAGGTTTGTAGAGAGATGAAAGATGAGGGTTTTGAGCCTGATGTTGTTACTTATGGTATAATCATCAATGCTTATTGTAAGGGTAAGAGATATGATGAGGCTGTTGGTTTTTATCATGAGATGCAATTGAAGAATGTGAGTCCTAGTCCTCATATTTATTGTACTTTGATTATTGGTCTTGGTAATGGTAATAGATTGGATGAAGCTCTTGAGTTTTTTGAAAAATCTAAGGCTAGTGGGTTTCCACCAGAGACGCCGACTTATAATGCTGTTGTTGGAGCGTACTGCTGGGCAATGCGGATGGATGATGCTTACAGGATTGTTGGTGAGATGAAAGAGCTTGGGATCGGTCCGAATTCTCGAACGTATGATATAATACTTGTTCATTTGATAAAGGGTGGAAGAACAAAAGAAGCTTACTCGGTTTTCAAGAGAATGAGTAGTGAGATGGGCTGTGAGCCGAGTGCTAACACGTACGCGATCATGGTGAGAATGTTTTGTAATGAAAACCAATTGGATATGGCGATGGTGGTTTGGGATGGGATGAAGGACAAGGGAATGCTTCCCGGAATACACATGTTCTCGACGTTGATCATTACGTTGTGTCGTGAAAATAAGTTGGATGAAGCGTGTAAGTACTTTCAACAAATGTTGGATGTTGGGATTCGGCCTACTGCGAATATGTTCAGTGCCTTTAAGAGTGCTCTAATGGATGCGGGAATGGAGAATACTGTGAAACATTTTGCTCTGAAAGTTGATAAACTGAGGAATACTCCATTAATTGCTTAA 1572 0.4148 MTLSRLFRKFPNFVQVSKSCYPISSTLSASSNFDHHHPNPTIQSIQNPSASLKFNIFSLHTSRLKKPTTPNPDAETICKILSTAPDSPLDVSLRNFPVEVSPELVADVLNKLSNAGILALSFFRWAEKQKGFKHSTGSFHALIEALGKIKQFKMIWNLVDDMKQLKLLNGDTFALIARRYVRARIVNEALKTFERMERYGLKPKISDFNKLIDVLCKSKFHVEKAQELFDKMRQWDLEPDLKTYTILLEGWSQQQNLLKVNEVCREMKDEGFEPDVVTYGIIINAYCKGKRYDEAVGFYHEMQLKNVSPSPHIYCTLIIGLGNGNRLDEALEFFEKSKASGFPPETPTYNAVVGAYCWAMRMDDAYRIVGEMKELGIGPNSRTYDIILVHLIKGGRTKEAYSVFKRMSSEMGCEPSANTYAIMVRMFCNENQLDMAMVVWDGMKDKGMLPGIHMFSTLIITLCRENKLDEACKYFQQMLDVGIRPTANMFSAFKSALMDAGMENTVKHFALKVDKLRNTPLIA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03406 523 Gene3D Tetratricopeptide repeat domain 221 388 IPR011990 GO:0005515
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 240 274 IPR002885 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
Vifa3g03406 523 SUPERFAMILY TPR-like 274 481 IPR011990 GO:0005515
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 239 IPR002885 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Vifa3g03406 523 Pfam PPR repeat family 345 388 IPR002885 -
Vifa3g03406 523 Pfam PPR repeat 313 342 IPR002885 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Vifa3g03406 523 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 208 506 - -
Vifa3g03406 523 Pfam Pentacotripeptide-repeat region of PRORP 397 509 IPR033443 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 415 IPR002885 -
Vifa3g03406 523 Pfam Pentatricopeptide repeat domain 228 287 IPR002885 -
Vifa3g03406 523 Pfam Pentatricopeptide repeat domain 159 215 IPR002885 -
Vifa3g03406 523 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 243 276 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 383 416 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 419 450 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 313 344 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 277 310 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 208 240 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 348 380 IPR002885 -
Vifa3g03406 523 NCBIfam pentatricopeptide repeat 454 486 IPR002885 -
Vifa3g03406 523 Gene3D Tetratricopeptide repeat domain 389 514 IPR011990 GO:0005515
Vifa3g03406 523 Gene3D Tetratricopeptide repeat domain 89 220 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03406 Vifa-Chr3 977583073 977584644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03406 55 507 Glycosyltransferase AT1G05670 23.732 1.64e-33 133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03406 3 977583073 977584644 Vifa3g03406 3 977583073 977584644 ECH