Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02466 ATGATACAAGAAGATCAAGGGCAGTGTTCATCTCAAACAATGAACAACTTTGAAACCTATCAACAAGAACAGTTTCTTCTCTATCAACAACAAATCATGAGACAACAAAACAGTTTCACTTTCCCAGGTGATCATCATCAAGTTGTTTCTTCACCAATCTTGCAACAACCATGGCCATCCATGTCTATGCAACAATTCCATGTCCATGAACCTTTTGTTATCCCTCAACAACAAAACTCATCATCACCTTATGCAAGCCTGTTCAACAGATCTTCTAGGGTTCCGTCTCTTCAGTTTGCATATGATCATCATCATAATCATCATGGAGGGTCTGAACAGCATCTTAGGATCATATCTGATACACTTCATCAACATGGATCTTTTGGTGGACTTCAATATCAAGGTGGTGATGTTGGAAAGATGAGTGCTCAAGAAATCATGGAGGCTAAAGCTCTTGCTGCTTCCAAGAGTCATAGTGAAGCTGAAAGAAGACGTAGAGAGAGAATCAATAATCATCTTGCTAAGCTTCGTAGCTTGTTACCAAGCACAACCAAAACGGATAAAGCATCATTGCTAGCAGAAGTGATACAGCATGTGAAAGAATTGAAGCGTCAAACATCATTAATATCAGAAACATGTCAAGTTCCAACGGAATGTGATGAGTTAACAGTGGATGCTGCTGCAAATGATGATGATGAAGAATATGCAAACGGAAACAAGTTTATTCTTAAAGCTTCACTCTGCTGTGATGATAGGTCAGATCTTTTACCTGAACTAATCAAGACATTGAAAGCATTAAGGTTGAGAACAGTGAAAGCTGATATAACAACACTTGGAGGACGTGTTAAGAATGTTTTGTTCGTCACTGGTGAAGATCATGATCATGAATATTGCATTAGTTCAATACAAGAAGCACTTAAAGCTGTGATGGAGAAGAGTGTTGGAGATGAATCTGCTTCTGGAAGTGTTAAGAGACAAAGGACTAATATAATATCTATATCTAATTAG 1008 0.38 MIQEDQGQCSSQTMNNFETYQQEQFLLYQQQIMRQQNSFTFPGDHHQVVSSPILQQPWPSMSMQQFHVHEPFVIPQQQNSSSPYASLFNRSSRVPSLQFAYDHHHNHHGGSEQHLRIISDTLHQHGSFGGLQYQGGDVGKMSAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLISETCQVPTECDELTVDAAANDDDEEYANGNKFILKASLCCDDRSDLLPELIKTLKALRLRTVKADITTLGGRVKNVLFVTGEDHDHEYCISSIQEALKAVMEKSVGDESASGSVKRQRTNIISISN 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02466 335 SMART finulus 159 208 IPR011598 GO:0046983
Vifa3g02466 335 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
Vifa3g02466 335 Gene3D - 148 209 IPR036638 GO:0046983
Vifa3g02466 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Vifa3g02466 335 FunFam transcription factor bHLH30 148 211 - -
Vifa3g02466 335 CDD bHLH_AtAIG1_like 148 226 - -
Vifa3g02466 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 213 IPR036638 GO:0046983
Vifa3g02466 335 PANTHER TRANSCRIPTION FACTOR BHLH30 98 330 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02466 Vifa-Chr3 631642734 631644656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02466 10 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.186 1.23e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g02466 HLH 1.6e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02466 3 631642734 631644656 Vifa3g02466 3 631642734 631644656 ECH