Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g02453 ATGTCTTCCACCCTCACAATGCAACGTTTCAAAATGGGTTTCTCTGATTACATCCAAGCATTAGAACAAGAACGTCGTAAGATTCAGGTCTTCCCTAAGGAACTTCCTCTCTCCTTAGAACTCGTTACACAGGCTATTGAGACTTGTAGACAGCAATTGTCTGGAACAACAACTGAGTATAATTTGAATGGACAATCTGAGTGTTCTGAACAGACAACATCAACAGGACCTGTTTTGGAAGAGTTTATTCCTATTAAGAAAAGGGCTTCTCCTTATTGTGAACAAGTGTATGATGAAGAAGAAGAAGAAGATGATGAGCAACATTCTCATCATAAGCTGCAAAAAATTTCAACGGATGATGATAATAAGAACTGTGACAAGAAGAAATCTGATTGGCTTAGATCTGTTCAGTTATGGAATTCAGATCCTCCATCTGAGGAGGATGCTACTAGGAAAGTGTCTGTGTTAGAATTGAAGAGAAATGGAAGTGCTGGTGGTGCTTTTCACCCGTTCCAGAAAGACGAAAGAGTTAACAAGACATGTGAGTTTTTGAGTAAAGGACAACCCTCTTTGAGCGGTGTAGCTGCTGTGAGTTCTAATGCGGCCGCCACTGTCACTAGTAACAATGCTGGAAACAACAAAAGAGAGGATAAAGAGGAAAAGAGAAAGCAGCGACGGTGCTGGTCGCAGGAGTTGCACAAACGTTTTTTGCACGCACTTCAACAACTCGGAGGTGCAGATTCGGCCACACCAAAGCAAATCAGAGAGCTGATGAATGTAGACGGTCTCACAAATGATGAAGTCAAAAGCCATTTACAGAAATACCGTTTGCATACAAGAAGACCGAGTTCAACGAATAGCGAAAGTGCCAAATCACAAACAGCAACACCTTTTGTCCTTGTAGGAAACATTTTTGTCCAACCAACAGAATATGGTGGGGTCGTTTCATCAACAACTTCAGGGGAAATGACAAAGGTGGTTGCACCTTCTGCAATTTACGCACCGGTGGCATCACATCCTCCGGTTGCTACAATTAAGAAGCCAGAGTTTAAGAAGTTTGAGAATTCAATCTCAGAAGAAAGGGGTAATAATAATAGTACCAGTGAAGGTGCTGTTCATTCAAATTCACCCGCTTCATCATCCTCTACACATACTACTACTAATACTTCCCATGGCTTTTGA 1182 0.4162 MSSTLTMQRFKMGFSDYIQALEQERRKIQVFPKELPLSLELVTQAIETCRQQLSGTTTEYNLNGQSECSEQTTSTGPVLEEFIPIKKRASPYCEQVYDEEEEEDDEQHSHHKLQKISTDDDNKNCDKKKSDWLRSVQLWNSDPPSEEDATRKVSVLELKRNGSAGGAFHPFQKDERVNKTCEFLSKGQPSLSGVAAVSSNAAATVTSNNAGNNKREDKEEKRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMNVDGLTNDEVKSHLQKYRLHTRRPSSTNSESAKSQTATPFVLVGNIFVQPTEYGGVVSSTTSGEMTKVVAPSAIYAPVASHPPVATIKKPEFKKFENSISEERGNNNSTSEGAVHSNSPASSSSTHTTTNTSHGF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g02453 393 Gene3D - 222 280 - -
Vifa3g02453 393 FunFam Myb family transcription factor 222 280 - -
Vifa3g02453 393 MobiDBLite consensus disorder prediction 98 125 - -
Vifa3g02453 393 SUPERFAMILY Homeodomain-like 221 281 IPR009057 -
Vifa3g02453 393 Pfam Myb-like DNA-binding domain 225 276 IPR001005 -
Vifa3g02453 393 NCBIfam myb-like DNA-binding domain, SHAQKYF class 223 278 IPR006447 GO:0003677
Vifa3g02453 393 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 220 280 IPR017930 -
Vifa3g02453 393 MobiDBLite consensus disorder prediction 105 125 - -
Vifa3g02453 393 MobiDBLite consensus disorder prediction 212 226 - -
Vifa3g02453 393 MobiDBLite consensus disorder prediction 203 226 - -
Vifa3g02453 393 MobiDBLite consensus disorder prediction 356 393 - -
Vifa3g02453 393 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 14 364 IPR044787 GO:0003700|GO:0006355
Vifa3g02453 393 MobiDBLite consensus disorder prediction 359 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g02453 Vifa-Chr3 621675660 621677470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g02453 16 380 G2-like Transcription Factor Family AT1G68670 45.337 2.18e-77 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g02453 Myb_DNA-binding 8.4e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g02453 3 621675660 621677470 Vifa3g02453 3 621675660 621677470 ECH