Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01646 ATGGAAAATCACAAGAACCAAACTGTTTCTATTGAGCCTCAAACAGAAAGAACAAAACTTCCAAATTTTCTTATATCAGTTAAACTCAAATATGTGAAACTAGGTTACCATTACTTAATCTCAAAAGCTATGTACCTTTTTCTTATACCACTTTTTGGTGCAGCTTCAGCTCATTTATCCACAATCTCATACCATGATGTTATTCAGCTTTATGAGAATCTCAAGTTCAATCTCATTTCAGTAACTCTATGTTCTAGTCTTATGAAAAAGATACTTGAGAGATCTGGTTTAGGACAAAGGACTTCTTTGCCTCCAGCATTGTTGACTGTTCCACCAAACCCTAGCATGGCTGAAGCAAGGAAAGAAGCTGAGGAGGTTATGTTTGGGGCTATTGATCAGCTTTTGGAGAAAACTGGTGTTAAGGCTAAGGATATTGGGATTTTGGTTGTCAATTGTAGTTTGTTTAATCCTACACCTTCTCTTTCTGCTATGATTGTGAATCATTATAAGTTGAGAGGGAATGTTCAAAGTTATAATCTTGGTGGTATGGGTTGTAGTGCTGGACTTATCTCTATTGACCTTGCTAAACAGCTTCTCCAGGTTCATCCAAACTCTTATGCCTTAGTGGTAAGCATGGAGAATATCACACTCAACTGGTATTTTGGCAACAACAGATCAATGTTAGTTTCAAACTGTCTCTTCAGAATGGGAGGATCAGCAATTCTCCTCTCCAACAAACCATCTGACAGCAAAAAAGCCAAATACCAACTGATCCACACCGTCCGGACTCACAAAGGCGCAGACGACAAATCATACGGCTGCGTCTTTCAAGAAGAAGACGAGAAGAGATCAGTTGGTGTATCCCTCTCAAAAGATTTAATGGCTGTCGCCGGAGAAGCACTCAAAACAAACATCACAACACTTGGTCCATTAGTCCTACCTATGTCAGAACAGCTTCTGTTTTTCGCGACTTTGGTCGCAAGAAAAGCCTTCAAGATGAAAATAAAACCCTACATTCCTGACTTTAAGTTGGCTTTTGAGCATTTTTGCATTCATGCTGGTGGAAGAGCTGTTTTGGATGAGTTAGAGAAAAATCTTGATCTTAGTGATTGGCATATGGAGCCATCAAGGATGACACTTTATAGATTTGGTAACACTTCTAGTAGCTCATTGTGGTATGAATTGGCTTATACTGAAGCTAAAGGGAGGATTAGAAAAGGTGATAGAACTTGGCAAATTGCATTTGGTTCTGGATTCAAGTGTAACAGTGCTGTGTGGCGTGCATTGAGGACCGTTGATCCTGCTAAGGAAAAGAATCCATGGATGGATGAGATTCATGAGTTTCCTGTTCATGTGCCTAAAGTTGAAACCATTGGGAAAACAAGTTAG 1389 0.3945 MENHKNQTVSIEPQTERTKLPNFLISVKLKYVKLGYHYLISKAMYLFLIPLFGAASAHLSTISYHDVIQLYENLKFNLISVTLCSSLMKKILERSGLGQRTSLPPALLTVPPNPSMAEARKEAEEVMFGAIDQLLEKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNVQSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGSAILLSNKPSDSKKAKYQLIHTVRTHKGADDKSYGCVFQEEDEKRSVGVSLSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVARKAFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLDLSDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTVDPAKEKNPWMDEIHEFPVHVPKVETIGKTS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01646 462 Gene3D - 77 428 IPR016039 GO:0016746
Vifa3g01646 462 PANTHER 3-KETOACYL-COA SYNTHASE 84 451 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa3g01646 462 SUPERFAMILY Thiolase-like 258 428 IPR016039 GO:0016746
Vifa3g01646 462 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 347 427 IPR013747 -
Vifa3g01646 462 CDD CHS_like 87 426 - -
Vifa3g01646 462 SUPERFAMILY Thiolase-like 82 249 IPR016039 GO:0016746
Vifa3g01646 462 PIRSF Very_long_ch_3-ktacl-CoA_syn 84 462 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa3g01646 462 PIRSF Very_long_ch_3-ktacl-CoA_syn 22 89 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vifa3g01646 462 Pfam FAE1/Type III polyketide synthase-like protein 85 329 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vifa3g01646 462 FunFam 3-ketoacyl-CoA synthase 66 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01646 Vifa-Chr3 425186102 425188103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01646 14 458 Miscellaneous Gene Families AT2G26640 69.138 0.0 704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01646 3 425186102 425188103 Vifa3g01646 3 425186102 425188103 ECH