Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g00769 ATGGAGAGTGGTTGGAAAGCTACAACTGAGATATCACCAAATTGTCCAAGATGTGGTTGTTCCAGCACAAAATTCTGTTACTACAATAACTACAGCTTAACTCAACCAAGATACTTTTGCAAAGGATGCAGACGATATTGGACAAAAGGTGGATCCCTCAGAAACGTCCCTGTTGGTGGTGGCTGCAGAAAAAACAGAAGAGGTAACAACAAAACCTTATCAGATCCTATTTTAAGGACTAATAATGTTTCATCTTCTACTTCATCCTCATTGCTCACTGAATATACTAAACCCAATATTGATCTTGCTTTAGTTTACGCAAATTTCCTTAATCAAAAGCCTGGTTCTCAAAAAATCGGGTTCGACCCTTTAGAAAACTCGAGGATATTATCGAATGTTGAAGTTGGTTCAAGTAGTTTAAATTTGTCGGAACTAGAACTTGGTTTCAAAGGGTGTTTGAATCTTCATGATCAGTTACTAGTATCGTCCACGTCCACATCGGTAACACATTTTGGTGAGTTCGAACTCGATTCTATGCAAACTCTTCCAAAAGATAGAGTTCATCATGATGATGGTTGTGTGAATTTTGAGCTACCACCTTTGCCAGGTGAAGAGGATTCCTCATCACATGATGATCATGTCATGTGGTCCAATGCTGAAATGATGATGAACCTTCCATTTCAAGTTACTCAACCTCCACCACCACCATTTCTTGCTCCTGATCAAATTCATCATGCAGACTTGTTATCTGGTAATTGGAGCCCTTTTGATTTTCCAAGAGATGCTTCTTTTTCTAGGCCTTGTTAA 807 0.3891 MESGWKATTEISPNCPRCGCSSTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRGNNKTLSDPILRTNNVSSSTSSSLLTEYTKPNIDLALVYANFLNQKPGSQKIGFDPLENSRILSNVEVGSSSLNLSELELGFKGCLNLHDQLLVSSTSTSVTHFGEFELDSMQTLPKDRVHHDDGCVNFELPPLPGEEDSSSHDDHVMWSNAEMMMNLPFQVTQPPPPPFLAPDQIHHADLLSGNWSPFDFPRDASFSRPC 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g00769 268 ProSitePatterns Zinc finger Dof-type signature. 15 51 IPR003851 GO:0003677|GO:0006355
Vifa3g00769 268 Pfam Dof domain, zinc finger 14 67 IPR003851 GO:0003677|GO:0006355
Vifa3g00769 268 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 154 IPR045174 GO:0003700|GO:0006355
Vifa3g00769 268 ProSiteProfiles Zinc finger Dof-type profile. 13 67 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g00769 Vifa-Chr3 166540257 166541063 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g00769 7 262 C2C2-Dof Transcription Factor Family AT3G52440 41.392 2.28e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa3g00769 zf-Dof 4.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g00769 - - psat:127092130 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g00769 3 166540257 166541063 Vifa3g00769 3 166540257 166541063 ECH