Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04461 ATGATACTGCAACAAATGTCTAGGTTATTTTCTCTAGGTCAAAAACAACACAGTGAAGAGATCTATAGCAAAGGGATAGAGATATGGCCACAACCACAACAAGACTTGAAGAACTACAGTGTGTTTGGAGTGGTTCCTAAAACCTGTTCATTTGATGAGTGTGGAAGAAGATTCATGATGATGAGACGCAATGGAGGAATGAACTGTCAAGACTGTGGGAATCAAGCGAAGAAAGACTGTACACATCTAAGATGCAGAACTTGTTGTAAGAGTCGAGGATTTCAGTGTCAAACTCATGTGAAGAGTACTTGGGTTCCAGCTTCTAAACGCCGTGAACGACAGCAACATCTATCTTTGTTGCAACATCAACAACCGTTTCGTCGTAGAGATCGTGGAGATAATTTTAAACAAAATATACACAATCAAGATGGTGCAGGTTCTTCTCTTCCATGTCCTCAACCACCTAACCCTACCACAGGGTTTGAGTTGGGACAGTTTCCAGCTGAAGTGAGTTCTGCATCAGTAACGTTTAGGTGTGTGAGAGTGAGTTCAGTGGACGGTCCAGATGAGCAATGTGCGTATCAAACGGCTGTGAACATAGGAGGACATGTTTTCAAAGGAGTTTTATATGATCAAGGTCCTTCTCCTCCTTCAAGTTTTTACACCAGTAGTACTATTGCTGCACCTATTGAAGGTTCTTCCGGTGGAGGTCATCATCAACCTCAACAACCTCAACAACTTGATTTCTTAACAACTGCGCATGTATCCGCAACCGCAACCACTGGTATCTCGTTTGATCCTTCTCTTTACTCAGCTCCGCTACACGCTTTCATGGCCGGTACACAATTTTTCCATCCACAACATCCTAATTAA 873 0.4261 MILQQMSRLFSLGQKQHSEEIYSKGIEIWPQPQQDLKNYSVFGVVPKTCSFDECGRRFMMMRRNGGMNCQDCGNQAKKDCTHLRCRTCCKSRGFQCQTHVKSTWVPASKRRERQQHLSLLQHQQPFRRRDRGDNFKQNIHNQDGAGSSLPCPQPPNPTTGFELGQFPAEVSSASVTFRCVRVSSVDGPDEQCAYQTAVNIGGHVFKGVLYDQGPSPPSSFYTSSTIAAPIEGSSGGGHHQPQQPQQLDFLTTAHVSATATTGISFDPSLYSAPLHAFMAGTQFFHPQHPN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04461 290 MobiDBLite consensus disorder prediction 107 163 - -
Vifa2g04461 290 Pfam Domain of unknown function (DUF702) 66 214 - -
Vifa2g04461 290 NCBIfam putative zinc finger domain, LRP1 type 68 110 IPR006510 -
Vifa2g04461 290 NCBIfam LRP1 C-terminal domain 165 214 IPR006511 -
Vifa2g04461 290 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 13 274 IPR007818 GO:0003700|GO:0006355
Vifa2g04461 290 MobiDBLite consensus disorder prediction 107 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04461 Vifa-Chr2 1308201137 1308202335 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vifa2g04461 DUF702 1.4e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04461 2 1308201137 1308202335 Vifa1g06710 1 1040229165 1040230678 ECH
Vifa2g04461 2 1308201137 1308202335 Vifa2g04461 2 1308201137 1308202335 ECH
Vifa3g05136 3 1497082278 1497083740 Vifa2g04461 2 1308201137 1308202335 PCT