Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04443 ATGGACTCTACTTCATTTTCAAAGCTACTAGTAGTAATGATTTTCTTTGTTTTCTTTTTGGATTGTCAATGCAATGTTACTTATGATAGAAAGTCTCTTCTCATCAATGGCCAAAGAAAAATCTTAATTTCTGGTTCTATTCACTATCCTAGAAGCACCCCTGAGATGTGGGAAGATCTAATTCGGAAGGCCAAACATGGTGGTCTTGATGTTATTGACACTTATGTCTTTTGGGATGTTCATGAACCATCTCCTAACAATTACAATTTTGAAGGAAGATATGATCTAGTTAGTGGAACTTTGGGGGAATTCCTGTTTGGGTTGAAGTATGTTCCGGGTATAAGCTTTAGAACCGATAATGAGCCTTTCAAGGCTGCAATGCAAGGTTTTACTCAGAAGATTGTTCAAATGATGAAGAGTGAAAACTTGTTTCAGTCTCAGGGTGGTCCAATCATTCTTTCTCAGATTGAGAACGAATACGGACCAGAGAGCAAGGCAATGGGAGCTGCTGGTCATGCATACCTAAACTGGGCTGCATATATGGCTGTTGGATTGGGAACAGGAGTCCCTTGGGTGATGTGCAAAGAAATTGATGCCCCAGATCCTGTGATTAATTCGTGTAATGGCTTTTACTGTGACGATTTCTCTCCAAATAAACCATATAAGCCTAGCATGTGGACTGAGTCTTGGAGTGGCTGGTTTACCGAATTTGGCGGCCCGATTCACCAGCGACCAGTTCAAGATCTGGCATTTGCAGTTGCTCGTTTCATTCAGAAGGGCGGATCATATGTGAATTACTACATGTATCATGGAGGAACTAATTTCGGACGTTCCGCTGGGGGTCCGTTCATTACTACAAGCTATGATTACGATGCTCCAATCGATGAATATGGTTTGATTAGGCAACCGAAATATAGCCATTTGAAGGATCTCCATAAAGTGATCAAGCGATGCGAGCATGCTTTGGTTTCTTCGGACCCTACTGTTACATCGTTAGGAACATACCAGCAGGCTCATGTATTCTCTGCAGGAACTGCAGGATGTGCAGCTTTTCTCGCAAACTATCATGTACAATCTGCTGCTACCGTAGTTTTCAATAATAAGCACTATGACTTGCCTCCATGGTCCATAAGCATCCTTCCCGATTGCAAAACTTCCGTATTTAATACCGCAAAAGTGAGAACTCAAACTTCAGTGGTAAAAATGCTTCATGTCGATTCTAGGTTCTCGTGGGAGACCTATGATGAAGATCTATCTTCCCTGGATGAAAGGTCAAGGATTACAGCTACCGGACTCTTAGAACATCTGAACATTACGAGAGACACCAGTGATTATCTATGGTACATAACCAGTGTTGACATAAGTTCATCAGAGTCATTTCTTCGAGGAGGACACAAACCGAGCATTAATGTGCAGTCTGCAGGACATGCTGTCCATGTGTATGTTAATGGACATTTTTTAGGGTCGGCTTTTGGGACAAGGAAACAGCGAAGTTGCACATTTAACGGGCCAGTTAACCTACACGCTGGAACTAATAAAATTGCTCTTCTTAGTGTAACTGTTGGATTGCAGAACGCTGGTCGGCATTATGAAACATGGGAGACAGGAATCACTGGTCCCGTTTTGATACATGGTCTCGACCATGGACCGAAAGATTTGACGCATAATAAATGGTCTTATCAGGTTGGCCTTAAAGGAGAATCTGTAAATTTGGCGTCACCGAATGAGGTCTCATCTGTTGATTGGGTCCAAGATTCACTAGCTACCCGAAGCCAATCACAACTGAAATGGCACAAAGCGTATTTTAACGCACCCGAGGGAAATGAACCATTGGCTTTGGACCTTGAAAGTATGGGTAAGGGCCAAGTATGGATCAATGGACAAAGCATAGGAAGGTATTGGATGGCTTATGCAATGGGTGACTGTAATTCTTGCAACTATTCTGGAACATTCAAGCCTGCAAAGTGCCAAATTGGTTGCGGGCAACCCACTCAACGATGGTATCACGTTCCAAGGTCGTGGCTAAAGCCAACAAAGAACCTGATAGTAGTGTTTGAAGAATTAGGCGGAAATCCTTGGAAAATATCTTTGCTAAAGAGAACGGTACATACCGCAGCAGTTCGTGAGTAG 2130 0.4272 MDSTSFSKLLVVMIFFVFFLDCQCNVTYDRKSLLINGQRKILISGSIHYPRSTPEMWEDLIRKAKHGGLDVIDTYVFWDVHEPSPNNYNFEGRYDLVSGTLGEFLFGLKYVPGISFRTDNEPFKAAMQGFTQKIVQMMKSENLFQSQGGPIILSQIENEYGPESKAMGAAGHAYLNWAAYMAVGLGTGVPWVMCKEIDAPDPVINSCNGFYCDDFSPNKPYKPSMWTESWSGWFTEFGGPIHQRPVQDLAFAVARFIQKGGSYVNYYMYHGGTNFGRSAGGPFITTSYDYDAPIDEYGLIRQPKYSHLKDLHKVIKRCEHALVSSDPTVTSLGTYQQAHVFSAGTAGCAAFLANYHVQSAATVVFNNKHYDLPPWSISILPDCKTSVFNTAKVRTQTSVVKMLHVDSRFSWETYDEDLSSLDERSRITATGLLEHLNITRDTSDYLWYITSVDISSSESFLRGGHKPSINVQSAGHAVHVYVNGHFLGSAFGTRKQRSCTFNGPVNLHAGTNKIALLSVTVGLQNAGRHYETWETGITGPVLIHGLDHGPKDLTHNKWSYQVGLKGESVNLASPNEVSSVDWVQDSLATRSQSQLKWHKAYFNAPEGNEPLALDLESMGKGQVWINGQSIGRYWMAYAMGDCNSCNYSGTFKPAKCQIGCGQPTQRWYHVPRSWLKPTKNLIVVFEELGGNPWKISLLKRTVHTAAVRE 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04443 709 Gene3D Glycosidases 21 98 - -
Vifa2g04443 709 PANTHER BETA-GALACTOSIDASE RELATED 17 705 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 FunFam Beta-galactosidase 420 557 - -
Vifa2g04443 709 Pfam Glycosyl hydrolases family 35 32 97 IPR031330 -
Vifa2g04443 709 Pfam Glycosyl hydrolases family 35 108 313 IPR031330 -
Vifa2g04443 709 FunFam Beta-galactosidase 565 706 - -
Vifa2g04443 709 Gene3D Glycosidases 99 318 - -
Vifa2g04443 709 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 PRINTS Glycosyl hydrolase family 35 signature 282 298 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 PRINTS Glycosyl hydrolase family 35 signature 262 277 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 PRINTS Glycosyl hydrolase family 35 signature 620 636 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 PRINTS Glycosyl hydrolase family 35 signature 593 607 IPR001944 GO:0004553|GO:0005975
Vifa2g04443 709 SUPERFAMILY Galactose-binding domain-like 377 547 IPR008979 -
Vifa2g04443 709 Pfam Beta-sandwich domain in beta galactosidase 322 393 IPR041392 -
Vifa2g04443 709 Gene3D - 375 544 - -
Vifa2g04443 709 SUPERFAMILY (Trans)glycosidases 25 318 IPR017853 -
Vifa2g04443 709 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 148 160 IPR019801 GO:0004553|GO:0005975
Vifa2g04443 709 FunFam Beta-galactosidase 267 395 - -
Vifa2g04443 709 FunFam Beta-galactosidase 98 318 - -
Vifa2g04443 709 Gene3D - 567 706 - -
Vifa2g04443 709 SUPERFAMILY Galactose-binding domain-like 555 698 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04443 Vifa-Chr2 1303876465 1303880386 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04443 2 1303876465 1303880386 Vifa2g04443 2 1303876465 1303880386 ECH
Vifa1g05833 1 913399092 913401419 Vifa2g04443 2 1303876465 1303880386 PCT