Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04351 ATGGCGAAATCTAGCGCCGACGATGCTGAACTCCGGCGAGCCTGCGAGGCTGCGATTGAAGGCACGAAACAGAAGATCGTCATTTCTATTCGAGTTGTTAAGACTCTCGGTACCTGGGGAAAAGCTGCCATGCTTGGTCGTCAAATGGCTAAACCTAGGGTTCTCGCGATCTCTACGAAAGCGAAAAGTCAACGGACAAAAGCTTTTCTTCGAGTTTTAAAGTATTCAAATGGAGGAGTTCTTGAGCCTGCTAAGATATACAAGCTGAAGCATCTTTCAAAAGTGGAAGTTGTATCTAATGATCCCAGTGGATGTACATTTACTTTGGGATTTGATAACCTTAGAAATCACAGTGTGGCTCCTCCACAATGGACAATGCGCAATATTGATGACAGGAACCGCCTTCTGCTTTCTATCTTGAATATCTGCAAAGATGTCCTGGGCCGCCTTCCTAAAGTTGTTGGTATCGATGTTGTGGAGATGGCTCTTTGGGCTAAGGAAAATACACCTGCAGTTCCCACTCAAACTAACCAAGCAGGTGGCGCTACTGTTGAATATGCTGTCAATGAAGCAGAATTGAAAGTCAATGTTGAGAAGGAGCTTGTCTCCCAAGCAGAGGAAGAGGACATGGAAGCTCTTTTGGGAAATTATATCACGGGTATTAGTCAAGCAGAGGCATTTTCTGAAAGGTTGAAAAGAGAGCTCCAGGCTCTGGAAGCAGCAAATGTCCATGCTATTTTAGAAAGTGAACCTTTGATAGACGAGGTGTTGCACGGGCTTGAAGCTGCCTCAAATTGCGTGGAAGACATGGATGAATGGTTAGGCATGTTCAATGTGAAACTCAGACACATGAGGGAGGATATTGAATCAATTGAAATCCGCAATAACAAGTTGGAAATGCAATCAGTAAATAACCAATCTCTCATTGTTGAGCTTGATAAACTTGTTGAGCAATTGCATATCCCTTCTGAGTATTCAGCATTTTTGACTGGAGATTCATTTGATGAAGCACAAATGCTTCAAAATATTGAAGCATCTGAGTGGTTGACTGGGGCCTTGCGTGCTTTTGAAGTGTCAAACATAGATCCTACTTATGCAAAGATGAGAGCTTTTAAAGAGAAGCGAGGAGAACTTCAAATAATAAAATCTACTTTTGTCAGAAGAGCCTCTGAGTTTTTGAGGAATTACTTTGCTACTTTTGTTGATTTCATGATGAGTGATAAGAATTACTTTTCTCAGCGGGGACAGTTGAAAAGGCCAGATCATGCTGACCTGCGATACAAGTGCAGGACATATGCACGCCTTTTGCAACATTTAAAGATTCTTGATAAGAATTGCCTGGGACCATTGAAAAAAGCTTATTGCTGTTCTTTAAACTTGCTTCTTCGCAGGGAGTTGAAGGAAATAAAGAAAAACTTATGCAAGATGGCCCGTGAGTATGCTAATGAACTTCGTGCTAGTAATAAAACTGCTAGAAGTCTAACTGAAGGTTCCACGGGTTCTGGTCAGAATGCAAATTCTGTTGACACTTCTACAGTTGCTGATGCATATGCAAAGCTGCTCACTGTTTTTATCCCACTTATGGTGGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTCGAAGTTCCTACACTTGATGTTAATAAGTCAGGACCCAGTAATGATGCTAAAGATGACGATGATTTGGGGATTGCCGACATTGATGATAATGAAAGTAAATCCAGTACAGGTATAAGTTCTGTGGAGCTTGCAGCTTTAAATGAATCACTTCAGGATTTGCTTGATGGAATTGAAGAAGACTTCTATGCTGTTGTGGAGTGGGCATGCAAGATTGATCCTTTATGCTGCATATCAATGCACGGAATAACAGAACGCTATCTCTCTAGTCAAAAAGCTGATGCAGCAAGATTTGTCCGCCTTATGCTTGGTGACCTTGAGTCTCGGATATCTATGATGTTTACTCGTTTTGTTGATGACGCTTGCCATCAGATTGAAAGAAGTGAACGCAATGTTCGCCAAAGTGTCCTACCCTACATTCCCAGGTTTGCAACCCTTGCAACACGGATGGAGCAGTACATTGCTGGACAGTCCAGGGATTTGGTTGACCAAGCATACACAAAATTTGTTAGCATAATGTTTGTAACTTTGGAAAAACTTGCACAAACAGAGCCAAAGTATGCGGATATTTTTCTTATAGAGAACTATGCTGCTTTTCAGAATAGTTTGTATGACCTAGCCAATGTGGTGCCTACTTTGGCCAAGTTTTATCATCAAGCTAGTGAAGCATATGAGCAATCATGCTCACGCCATATTAGCATGATTATCTATTATCAATTTGAACGCCTTTTCCAGTATGCTCGAAGGATTGAGGACTTGATTTTCAATAATGTTTCACCTGAAGAGATTCCTTTCCAGCTTGGGCTGTCAAAAGTGGATTTTCGAAAGATGCTAAAAGCCAGTTTGTCTGGGATGGACAGGTCCATTGGTGCAATGTATAAGAAATTGCAGAAGAATTTGACTTCAGAGGAACTGTTACCTTCCTTGTGGGATAAATGCAAGAAGGATTTTATCGATAAGTATGATAGTTTTGTCCAACTTGTGGCAAAGATTTACCCTGCTGAGTCAGTACCTTCTACACAAGAATTGAAAGATCTTTTAGCTAACATGTAA 2673 0.4111 MAKSSADDAELRRACEAAIEGTKQKIVISIRVVKTLGTWGKAAMLGRQMAKPRVLAISTKAKSQRTKAFLRVLKYSNGGVLEPAKIYKLKHLSKVEVVSNDPSGCTFTLGFDNLRNHSVAPPQWTMRNIDDRNRLLLSILNICKDVLGRLPKVVGIDVVEMALWAKENTPAVPTQTNQAGGATVEYAVNEAELKVNVEKELVSQAEEEDMEALLGNYITGISQAEAFSERLKRELQALEAANVHAILESEPLIDEVLHGLEAASNCVEDMDEWLGMFNVKLRHMREDIESIEIRNNKLEMQSVNNQSLIVELDKLVEQLHIPSEYSAFLTGDSFDEAQMLQNIEASEWLTGALRAFEVSNIDPTYAKMRAFKEKRGELQIIKSTFVRRASEFLRNYFATFVDFMMSDKNYFSQRGQLKRPDHADLRYKCRTYARLLQHLKILDKNCLGPLKKAYCCSLNLLLRRELKEIKKNLCKMAREYANELRASNKTARSLTEGSTGSGQNANSVDTSTVADAYAKLLTVFIPLMVDESSFFAHFMCFEVPTLDVNKSGPSNDAKDDDDLGIADIDDNESKSSTGISSVELAALNESLQDLLDGIEEDFYAVVEWACKIDPLCCISMHGITERYLSSQKADAARFVRLMLGDLESRISMMFTRFVDDACHQIERSERNVRQSVLPYIPRFATLATRMEQYIAGQSRDLVDQAYTKFVSIMFVTLEKLAQTEPKYADIFLIENYAAFQNSLYDLANVVPTLAKFYHQASEAYEQSCSRHISMIIYYQFERLFQYARRIEDLIFNNVSPEEIPFQLGLSKVDFRKMLKASLSGMDRSIGAMYKKLQKNLTSEELLPSLWDKCKKDFIDKYDSFVQLVAKIYPAESVPSTQELKDLLANM 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04351 890 Coils Coil 463 483 - -
Vifa2g04351 890 PANTHER SEC3/SYNTAXIN-RELATED 49 882 - -
Vifa2g04351 890 Coils Coil 221 248 - -
Vifa2g04351 890 Pfam Exocyst complex component SEC3 N-terminal PIP2 binding PH 49 144 IPR028258 -
Vifa2g04351 890 Pfam Exocyst complex component Sec3 224 873 IPR019160 GO:0000145|GO:0006887
Vifa2g04351 890 Coils Coil 188 208 - -
Vifa2g04351 890 Coils Coil 281 301 - -
Vifa2g04351 890 MobiDBLite consensus disorder prediction 551 576 - -
Vifa2g04351 890 SMART Sec3_PIP2_bind_2 48 146 IPR028258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04351 Vifa-Chr2 1279621152 1279646568 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04351 2 1279621152 1279646568 Vifa2g04351 2 1279621152 1279646568 ECH
Vifa3g04993 3 1451991692 1452019189 Vifa2g04351 2 1279621152 1279646568 PCT