Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04075 ATGGGTAGAGTTAGTAGCAGTATATTGCGTGCCAAAGGGGAAGAGCTTCCACCCAGAATTACTAGATCAAGGGCGAGAGTTTTGGAGTCTTCTTCTGATGTTAAGAGAGCAGCGAGTTCTTCTGAGAATAAGACTTGTGTGGTTGTTCCTGATCTTCCTCCGCGGAAGAGAAGGGTCAGGCTTACAGATGTTACTAACATCCGTGCAAAACCACGTGATAAACGTGTTAAACAGTCCGAATTTCAGGCCAAAGGAGTTTACCAGAAGAAAACCACAAAGCTAACTTCAGATGTCTCCATTGAAGTTTCATCAGCACAAGGGGGTGTTAAAGCAATGGTGGAGTCAAATGACACTATTGCTGCAGTAACTTTGAGTGAAGAGCCAACTGGAGATTGTATGTCCAACAACATTCGAGAACATGTTATGACCGACACTGCACTCTCGATGCAAGAATCTGTGAACTCTGGCGAACTTCAAACCTCTTCAAGTCCAAACAAAGATATAAATATGATTTGTGAGAAGCCAGGAGCCTCGGATTGCCTGACTGTTGTGGACATTGATAAAGAGTTAAAGGATTCTCAAATTTGGAGTGATTATGCCCCTGATATATACTGCATAGCTCGAGTAACTGAGCTTGAGAAGAGGTCATCAACCAATTACATGGAGAGATTGCAGCATGATATTTCTCCAAGAATGCGCGGAATTCTGATTGACTGGCTTGTGGAGGTTTCGGAGGAATACAAGTTGGTTCCAGACACTCTATACCTTACTGTTAACCTCATTGATCGGTTTCTCTCTACATGTTTGATTCAGAAACACAAGCTCCAATTGCTTGGCGTTACTTGTATGTTAATTGCATCAAAGTACGAAGAGATTATTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACACAAAAGAAGAGGTAGTGAAAATGGAGAAGGAAGTTCTTAGCCTTCTGCGTTTTCAATTATCTGTTCCCACAACCAAAACTTTTCTCAGGAGATTCATTCAAGCAGCACAATCTTCTTACAAGGATCCTCGTGTTGAACTGGAATTCCTGGCAAACTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTACAGTTTCTACCTTCTCTTGTGGCTGCTTCTGCTGTATTCCTTGCGAGATGGACCCTCAACCACTCAGAACATCCATGGACTCCAACTCTGGAGCATTATACAAACTGCAAAGCTTCAGAGCTAAAGACCATTGTTATTGCAATGAAAGATCTGCAGTTAAATACCAAAGGTTGTCCCCTCCATGCTATTCGCGATAAATATAAACAAGAGAAGTTCAACTGTGTGGCGAATCTATCTCCCAAACCAGTGCAGTCATTGTTATTCAACTGTAAATTAGCATTTCTGAGTACTCAAGCATGA 1419 0.4172 MGRVSSSILRAKGEELPPRITRSRARVLESSSDVKRAASSSENKTCVVVPDLPPRKRRVRLTDVTNIRAKPRDKRVKQSEFQAKGVYQKKTTKLTSDVSIEVSSAQGGVKAMVESNDTIAAVTLSEEPTGDCMSNNIREHVMTDTALSMQESVNSGELQTSSSPNKDINMICEKPGASDCLTVVDIDKELKDSQIWSDYAPDIYCIARVTELEKRSSTNYMERLQHDISPRMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTCLIQKHKLQLLGVTCMLIASKYEEIIAPRVEEFCFITDNTYTKEEVVKMEKEVLSLLRFQLSVPTTKTFLRRFIQAAQSSYKDPRVELEFLANYLAELTLVEYSFLQFLPSLVAASAVFLARWTLNHSEHPWTPTLEHYTNCKASELKTIVIAMKDLQLNTKGCPLHAIRDKYKQEKFNCVANLSPKPVQSLLFNCKLAFLSTQA 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04075 472 PANTHER CYCLINS 162 446 IPR039361 -
Vifa2g04075 472 SMART Cyclin_C_2 331 454 IPR004367 -
Vifa2g04075 472 PIRSF Cyclin_A_B_D_E 18 462 IPR046965 GO:0016538|GO:0044772
Vifa2g04075 472 SMART cyclin_7 238 322 IPR013763 -
Vifa2g04075 472 SMART cyclin_7 335 423 IPR013763 -
Vifa2g04075 472 SUPERFAMILY Cyclin-like 192 328 IPR036915 -
Vifa2g04075 472 FunFam Mitotic cyclin 6 216 316 - -
Vifa2g04075 472 SUPERFAMILY Cyclin-like 330 453 IPR036915 -
Vifa2g04075 472 Gene3D - 202 450 - -
Vifa2g04075 472 MobiDBLite consensus disorder prediction 1 44 - -
Vifa2g04075 472 MobiDBLite consensus disorder prediction 15 31 - -
Vifa2g04075 472 Pfam Cyclin, N-terminal domain 202 329 IPR006671 -
Vifa2g04075 472 Gene3D - 216 329 - -
Vifa2g04075 472 CDD CYCLIN_AtCycA-like_rpt2 331 445 - -
Vifa2g04075 472 FunFam Cyclin A1 318 450 - -
Vifa2g04075 472 ProSitePatterns Cyclins signature. 233 264 IPR006671 -
Vifa2g04075 472 Pfam Cyclin, C-terminal domain 331 453 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04075 Vifa-Chr2 1193163236 1193166983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g04075 1 460 Core Cell Cycle Gene Families AT5G25380 49.153 3.58e-134 393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04075 2 1193163236 1193166983 Vifa2g04075 2 1193163236 1193166983 ECH
Vifa3g04492 3 1286487150 1286490804 Vifa2g04075 2 1193163236 1193166983 PCT