Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03642 ATGGTCGGTTGGGCTATTGCTGTTCACGGCGGCGCTGGTGTGGATCCTAATCTACCACCACAGCGTCAAGAAGAAGCCAAACAGCTTCTTACTCATTGTCTCAATCTTGGCATCTCCGCTCTCCGTTCCAATGCCTCCGCCCTCGATGTCGTTGAACTTGTCGTGAGACAATTGGAAACGGATCCTTTGTTCAATTCTGGCCGTGGATCTGCTCTCACGGCAAAAGGAACGGTGGAGATGGAGGCTAGTATCATGGACGGTGCCAAGAGAAGATGCGGTGCTGTTTCTGGTGTCTCCACCGTGAAAAACCCTATCTCACTTGCTCGTCTTGTTATGGAGAAATCACCTCATTCATATCTGGCCTTTTCTGGCGCCGAAGAATTCGCTAGACAACATGGTTTGGAGGTTACAGAAAATGAATACTTCATCACCCCTGATAATGTTGGTATGCTGAAACTTGCAAAAGAAGCAAATGCAATTCTGTTTGACTATCGAATTCCGACCTCCGCTGGAAAATGTGCAGGAGTTGAAAGTCCAGTGAAGATGAACGGTCTGCCGATAAGCGTTTATGCGCCGGAGACGGTCGGATGTGTGGTGGTGGATAGTGAAGGAAGATGTGCTGCTGCTACTTCAACTGGTGGTTTAATGAACAAAATGAGTGGTCGAATTGGTGACTCGCCAATCATAGGTGCTGGAACATATGCATGTGAATTATGTGGAGTTTCTTGCACTGGTGAAGGTGAAGCAATCATACGTAGTACTCTTGCACGTGAAGTTGCTGCAGTTATGGAGTATAAAGGTTATAGGCTTCAAGAGGCTGTGGATTATGTGATAAAACATCGTCTTGATGAAGGATTTGCTGGTCTTATTGCTGTGTCTAATAAGGGTGAAGTGGCTTATGGTCATAACTGTAATGGAATGTTTCGGGGTTGTGCTACTCAAAAGGGATTTATGGAGGTAGGAATCTGGGATTAG 975 0.4626 MVGWAIAVHGGAGVDPNLPPQRQEEAKQLLTHCLNLGISALRSNASALDVVELVVRQLETDPLFNSGRGSALTAKGTVEMEASIMDGAKRRCGAVSGVSTVKNPISLARLVMEKSPHSYLAFSGAEEFARQHGLEVTENEYFITPDNVGMLKLAKEANAILFDYRIPTSAGKCAGVESPVKMNGLPISVYAPETVGCVVVDSEGRCAAATSTGGLMNKMSGRIGDSPIIGAGTYACELCGVSCTGEGEAIIRSTLAREVAAVMEYKGYRLQEAVDYVIKHRLDEGFAGLIAVSNKGEVAYGHNCNGMFRGCATQKGFMEVGIWD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03642 324 Gene3D (Glycosyl)asparaginase 194 324 - -
Vifa2g03642 324 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 321 IPR029055 -
Vifa2g03642 324 PANTHER L-ASPARAGINASE 4 311 IPR000246 GO:0016787
Vifa2g03642 324 FunFam Isoaspartyl peptidase/L-asparaginase 194 324 - -
Vifa2g03642 324 CDD Asparaginase_2 5 316 - -
Vifa2g03642 324 Pfam Asparaginase 4 323 IPR000246 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03642 Vifa-Chr2 1061987279 1061988614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g03642 6 258 Miscellaneous Gene Families AT4G00590 27.574 1.16e-15 75.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03642 2 1061987279 1061988614 Vifa2g03642 2 1061987279 1061988614 ECH
Vifa3g04882 3 1416585777 1416587369 Vifa2g03642 2 1061987279 1061988614 PCT