Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g03559 ATGTCACATGAAAAAGTCATTTATATTTCAATGAAGTCAGAACTTATAAAAAGTTCTTGTCCTAATTCTCAAGCCATGTCTTCAGTTTCAAGAAACAAAGATCCTAGAATTCCTCGAAAATTGGCTTTGCAAAAAGATGTGGAGAGGTTGAAGAAGAAGCTTAAGCATGAGGAGAATATTCATAAGGCATTGGAGAGAGCTTTGAGTCGACCTTTGGGAGCCTTGCCTCGTCTTCCTCCTTATCTCCCTCCCTATACGCTAGGGCTTGTGGCAGAAGTTGCAGTACTTGAAGAAGAAATAAGAAGGCTTGAAGAGATGGTCTTACATTGTAGGAAGGATTTGAATCAAGAAGCAGTCAACATGTCATCCTCCAAGAAGAAAATCGAGCATTCACTTGGGAATAATGCAAACCCAAATGAGAATTCAAAATTCGGCAATACTACAATTAGGTCTACAACAACACTTCCTGATGATAGACAAGGAAAAGAGATTCAATCATGTACTCTGTCTTTCAAGAGCAGCAAGCAATCCATATGTAAAGGCCCAACCACAAAAGTTTCGATTAAGAAAGTTCCAATTGACGATAAATCACTACATAAACGATCTGAACCTCCCAAAAAGAAGCCGCAGGAACTAAGAAATCCTCGTCTACAAGAAACTCCACAGGAAGATGAAAGTCCGAATATAATCTCTGAAAATATTCTCAAGTGTTTAACTAGCATTCTCTTGAGAATGAGTAAACTATCTTATAGGCCTTTAAAATCTAAGAAATGTATTGAAGGAACAGAATTTTTGGATCCCTATGGTATCTTAGAATTCGGAAAGAGAGATATTGGTCCTTACAAGCAATTAGCTGCAAGTAATATTGAAGCTGAATCTTTCAATCCAACACGAACTGCTAAGTCTTTGTTTTTACTGCATCGGTTAAAAATTCTTTTGAGAAAATTAGCGAGTGTTAATATCGAGAATCTCAACCACCAAGAGAAGCTTGCATTCTGGATAAACATATATAACTCGTGTATGATGAATGCTTTCATAGAAAATGGCATACAAAAGAGTCCTGAAAAGGTTGTTGAATTAATGCAGAAGGCTACAATAAATATAGGTGGAAACTTGTTAAATGCAACAACCATAGAACAGTGCATTTTAAGGCTTCCATATCACTGGAAATATTTAAATACGAAACAGATCACATTATTAAAGGAAGTGAAAAATCACGAAACCACATTAAGACGCACTTATGGACTCGAATTGTCAGAACCCCTAGTCTCATTCGCTCTTTCGAGAGGAACTTGGTCATCTCCTGCTGTTAGAGTTTACACAGCAGCCAATGTTGAAAAGGAACTTGAATTGGCTAAAAGAGAATACTTGCAAGCAGCAGTTGGAATTTCAACATCAAAATGTGTTATTCCAAAGATGTTGGATTGGTATTTACTTGATTTTGCAAAAGACTTGGAATCATTGCTAGATTGGATATGCCTACAATTACCAAATGAACAATGGAAAGAAGCAATTATGTTCCTTGAGAAAAGAAAAACCCAACCCTTCTCACAATTTGTAAAAATTATGCCATATGAGTTCAGATTTAGATACTTGCTCTACACATGA 1608 0.3644 MSHEKVIYISMKSELIKSSCPNSQAMSSVSRNKDPRIPRKLALQKDVERLKKKLKHEENIHKALERALSRPLGALPRLPPYLPPYTLGLVAEVAVLEEEIRRLEEMVLHCRKDLNQEAVNMSSSKKKIEHSLGNNANPNENSKFGNTTIRSTTTLPDDRQGKEIQSCTLSFKSSKQSICKGPTTKVSIKKVPIDDKSLHKRSEPPKKKPQELRNPRLQETPQEDESPNIISENILKCLTSILLRMSKLSYRPLKSKKCIEGTEFLDPYGILEFGKRDIGPYKQLAASNIEAESFNPTRTAKSLFLLHRLKILLRKLASVNIENLNHQEKLAFWINIYNSCMMNAFIENGIQKSPEKVVELMQKATINIGGNLLNATTIEQCILRLPYHWKYLNTKQITLLKEVKNHETTLRRTYGLELSEPLVSFALSRGTWSSPAVRVYTAANVEKELELAKREYLQAAVGISTSKCVIPKMLDWYLLDFAKDLESLLDWICLQLPNEQWKEAIMFLEKRKTQPFSQFVKIMPYEFRFRYLLYT 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g03559 535 MobiDBLite consensus disorder prediction 190 226 - -
Vifa2g03559 535 PANTHER EXPRESSED PROTEIN 35 533 - -
Vifa2g03559 535 MobiDBLite consensus disorder prediction 190 220 - -
Vifa2g03559 535 Coils Coil 40 67 - -
Vifa2g03559 535 Pfam Leucine-zipper of ternary complex factor MIP1 39 117 IPR025757 -
Vifa2g03559 535 Coils Coil 86 113 - -
Vifa2g03559 535 Pfam Protein of unknown function, DUF547 322 457 IPR006869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g03559 Vifa-Chr2 1036978288 1036981093 Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g03559 2 1036978288 1036981093 Vifa2g03559 2 1036978288 1036981093 ECH
Vifa1g07107 1 1097237813 1097240348 Vifa2g03559 2 1036978288 1036981093 PCT