Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g02493 ATGGATAATGGTTGCTTCTCTACACCGAGGCGCGATTTTCCTGCTGGTTTACGAGTTCTTGTTGTCGATGATGATCCTACTTGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACAAGCTCTAAACTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTCATCAGCGATGTAAACATGCCTGACATGGACGGTTTCAAGCTTCTCGAGCACGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGACGGAGAAACAAGCAGGGTGATGAAAGGCGTTCAACATGGTGCGTGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGCTGCGAAACATATGGCAACATGTTTTCAGAAAAAGGATACACGAGGTTAGAGAGTTTGAAAATTTCGAGAGTTTCGAGAGCATGCACTTGATGAGAAATGGATCGGATCTCTCTGAGGAGGGGAACATGTTTGCTTTAGAAGATATGACTTCATCGAAGAAGCGCAAAGATGTAGATGGCAAACATGACGATAGAGAATTTTTGGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTACCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTGCAGAAATATCGGCTTTACTTGAGCAGGCTTCAGAAAGATAATGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTTAAAAGATGTAGGAAGTTTTGGTTTTCAGAACTCGGCAGACAAGCAACAAAACGACGCTTCAATTGATCGATACAACTATTCAGAAGGAACCTTACAACATCAGAACATGGAAACTAAAAGTCATGAGAGTAATCCCAAAGGAACCGTTCCACATTCCATCACGGCAGAAAAAGTAAAAGCTTTTGTCCCTCTTGAATCAGAAGGAAAAAATGCCGCATTCCAAAGCACCATGTCGACGACACAATATTCTTGGACTGAAATTCCAAAAACACAGCTAAAGAAAGAACAAAAGCCAATTGTTCATCCAGAGGATAACTTCAACCTATTGCCCTTACATGCGAAGCAAGATGTCGCTGGTTGTATAGAAACAAAGCCGAGATTTGCTGATTACAAGAAAGACTACACTAGTTCAGTGAGTTCGATAAGAAGTTCAATTGACACCTTTCCTTTCCAACCCGGAAACCTGATGATGAATTATCAACCTTCACAACAACCCATTTCAACTACTAATTTGGGCGTAAAAACACAGTCATATAATAATCTCAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTTGGAGGTGAAGCTGCTTCTGCTGCGCCTTTGGACGAAGACCTATATTTCTATTGGCATAATATGAACTTTGGTCAGCAGAGTATTGGGATGCCGGAGTATTATGATCCAGGGCTTCTCACAGAAGTTCCAAACCACTTATATGATTCAACAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA 1608 0.4005 MDNGCFSTPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARQALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSDLSEEGNMFALEDMTSSKKRKDVDGKHDDREFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPLKDVGSFGFQNSADKQQNDASIDRYNYSEGTLQHQNMETKSHESNPKGTVPHSITAEKVKAFVPLESEGKNAAFQSTMSTTQYSWTEIPKTQLKKEQKPIVHPEDNFNLLPLHAKQDVAGCIETKPRFADYKKDYTSSVSSIRSSIDTFPFQPGNLMMNYQPSQQPISTTNLGVKTQSYNNLSCISDLESYQRNLLFGGEAASAAPLDEDLYFYWHNMNFGQQSIGMPEYYDPGLLTEVPNHLYDSTDYSVIDQGLFIA 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g02493 535 SMART REC_2 17 129 IPR001789 GO:0000160
Vifa2g02493 535 FunFam Two-component response regulator 17 175 - -
Vifa2g02493 535 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 307 IPR045279 GO:0009736
Vifa2g02493 535 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Vifa2g02493 535 Gene3D - 17 198 - -
Vifa2g02493 535 Gene3D - 199 258 - -
Vifa2g02493 535 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Vifa2g02493 535 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Vifa2g02493 535 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Vifa2g02493 535 CDD REC_typeB_ARR-like 19 133 - -
Vifa2g02493 535 FunFam Two-component response regulator 195 258 - -
Vifa2g02493 535 SUPERFAMILY CheY-like 16 144 IPR011006 -
Vifa2g02493 535 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g02493 Vifa-Chr2 654524403 654526894 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g02493 13 265 Response Regulator Gene Family AT2G25180 56.641 1.16e-83 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vifa2g02493 Response_reg 4.7e-25 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g02493 2 654524403 654526894 Vifa2g02493 2 654524403 654526894 ECH
Vifa2g02493 2 654524403 654526894 Vifa2g02492 2 654524403 654526894 PCT