Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01760 ATGCAGAAAACCACTCTATTCCTTTCACTACTCTTCCACTTTTTCTCAACCATAACCTCAAAATCCACCATCGAACCATGCACAAACTCCGACACATGCAACGCTTTACTCGGTTATACACTCTTTACAGACCTCAAAGTCTCCGAAGTTTCATCCCTCTTCCAAATCGACCCTATCTCTCTCCTAACCGCCAATGCCATCGACATCTCTTACCCCGACGTAGAACATCACATCCTCCCTTCCAAACTCTTCCTCAAAATCCCAATCTCATGTTCCTGTGTTGACGGGATTCGCAAATCCGTTTCCACAAACTACAAGATTCGTCCTTCTGACACCCTCTCCACCATTGCTGACTCTGTTTACGGTGGTTTGGTTTCTTCTGACCAGCTTAAAGAGGCGAATTCTATAACGGATCCTTCTGTTCTCGATGTTGGACAGAACCTTGTTGTTCCTCTGCCTTGTACTTGTTTCAATGGCTCTGATAATGCTTTGCCTGCTATTTATTTGTCTTATGTTGTTCAGCCTCTTGATAGTTTGAGTTATATTGCGGCTAGGTATTTTACTACTCTTACTGATTTGATGAATGTTAATGCTATGGGGACTACTTCTATCTCTGATGGTGATATTCTTGCTATTCCGATTCCCGCTTGTGCTTCAAATTTTCCGAAATATGCTTCTGATTTTGGATTGCTTGTCCCTAATGGAAGTTATGCCATTACAGCAGGCCATTGTGTGCAATGTAGCTGTGGACCACGAAACTTAAATTTGTACTGTATGCCGGCTTCTCTAGCTGTTTCTTGCTCCAGCATGCAATGTAAAAGCAGCAATCTTATGCTTGGCAATGTTACCGTGCAACAGACTAGTGGTGGTTGTAATGTGACTTCTTGCAGTTATGATGGTCTTGTTAATGGCACCATAGCGACAATGTTGACTCCGTCTCTTCAGCCTCGATGCCCAGGGACACAGGAATTTCCTCCTCTTATCGCCCCACCTACAACTGTTGCGAGAGAATCAATATTTGCACCAGCACCCTCACCAACATCGCCGTTAGATGGAACTGATGGTAGATCACCCAAACCCTCTGTGGTGCCTTCAACGGGATTTACTCCGGCTAATGGCCCTGTTAGTGGAATTTCTTCTGGTGCTTCTGCTGCATGCTCCTTGGTGAAACCATTACCTGCTTTGACAGTTCCACTTGTGCTATTACTTGTCAAGCTGATGATACCTGTAGCATTGTAA 1239 0.4431 MQKTTLFLSLLFHFFSTITSKSTIEPCTNSDTCNALLGYTLFTDLKVSEVSSLFQIDPISLLTANAIDISYPDVEHHILPSKLFLKIPISCSCVDGIRKSVSTNYKIRPSDTLSTIADSVYGGLVSSDQLKEANSITDPSVLDVGQNLVVPLPCTCFNGSDNALPAIYLSYVVQPLDSLSYIAARYFTTLTDLMNVNAMGTTSISDGDILAIPIPACASNFPKYASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPASLAVSCSSMQCKSSNLMLGNVTVQQTSGGCNVTSCSYDGLVNGTIATMLTPSLQPRCPGTQEFPPLIAPPTTVARESIFAPAPSPTSPLDGTDGRSPKPSVVPSTGFTPANGPVSGISSGASAACSLVKPLPALTVPLVLLLVKLMIPVAL 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01760 412 Pfam LysM domain 105 151 IPR018392 -
Vifa2g01760 412 Pfam LysM domain 171 213 IPR018392 -
Vifa2g01760 412 CDD LysM 170 212 IPR018392 -
Vifa2g01760 412 SUPERFAMILY LysM domain 169 214 IPR036779 -
Vifa2g01760 412 SUPERFAMILY LysM domain 104 152 IPR036779 -
Vifa2g01760 412 Gene3D LysM domain 99 159 IPR036779 -
Vifa2g01760 412 MobiDBLite consensus disorder prediction 350 368 - -
Vifa2g01760 412 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 7 322 - -
Vifa2g01760 412 ProSiteProfiles LysM domain profile. 169 212 IPR018392 -
Vifa2g01760 412 CDD LysM 105 150 IPR018392 -
Vifa2g01760 412 ProSiteProfiles LysM domain profile. 103 150 IPR018392 -
Vifa2g01760 412 Gene3D LysM domain 160 221 IPR036779 -
Vifa2g01760 412 SMART LysM_2 104 151 IPR018392 -
Vifa2g01760 412 SMART LysM_2 170 213 IPR018392 -
Vifa2g01760 412 MobiDBLite consensus disorder prediction 339 368 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01760 6 387 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.992 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01760 - - gmx:100808966 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01760 2 453040153 453042212 Vifa2g01760 2 453040153 453042212 ECH