Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g01545 ATGAAAAGGGATCGCCAAGAAACCTCTGCTGGAGGTGCGAATAGCAACAACAGCAACAACTTTGTAAGTGTACGAGGTGAATGTTCATCAATGCAGAACAACAACAACACAAACGGGAAAACAAGTTTGTGGAGAGAAGAGAAAGACAGCAGTGGTGGAATGGACGAGTTACTAGCGGCATTAGGTTACAAGGTTCGTTCTTCAGACATGCTTGACGTTGCTCAAAAGCTTGAACAACTCGAGATGGTGATGGGTAGTGCTCAAGAAGAAGGAATTAACCATCTTGCTTCTGATACAGTTCACTACGACCCTACCGATCTATATTCATGGGTTCAAACCATGCTCACTGAACTCAACCCTTCCACCGATTCACAAATCAATGACCCTTTAGACGCTTCGTCTTCCATCTTCAACGATAACTCTCAGTATGATCTCAGTGTTATTCCTGGAATGGCCGCGTACCCACCTCAGACCCAGAATCAAAACAACGAAAGCGAAGGCTCTGTCAGTAACAAAAGATTGAAGACATGGGAGAGTGAAACGGAATCAGATGTTTTTCTGCCGGCGTTATCACCGCCGGTGGAGACTACAAGACCTGTGGTTCTCGTTGACTCGCAGGAAACTGGGGTTCGTCTTATTCACACCATGATGGCTTGTGCCGATGCGATTCATCGTGATGATCTCAAGATTGCTGATACACTCGTGAAGAGTATCGGAATTTTGGCTCCGTCGCAAACTGGTGCTATGGGTAAAGTTGCTTCGTATTTCGCACAAGCTTTCTATCGGAGAATCTACAGGGTTTCACCAGATGAAACCATTGATTCGTCTTTATCTGATGCTCTTCACATGCACTTTTATGAATCTTGTCCTTATCTCAAATTCGCTCACTTCACCGCTAATCAAGCTATTCTGGAAGCTTTCGCCGGTGCTGCAAGTGTTCATGTCATTGATTTTGGTCTCAAACAAGGGATGCAGTGGCCAGCGCTTATGCAAGCACTTGCATTACGTCCCGGTGGTCCACCAACTTTCCGGTTAACCGGAATCGGACCACCGCAGACGGGTAACACCGATGCTTTACAACAGGTGGGTTGGAAATTGGCTCAGCTTGCTCAAACCATTGGTGTTCAGTTCAAGTTTTCGCGGATTCGTTTGCACCAGTCTTGCGGATCTTGA 1173 0.4621 MKRDRQETSAGGANSNNSNNFVSVRGECSSMQNNNNTNGKTSLWREEKDSSGGMDELLAALGYKVRSSDMLDVAQKLEQLEMVMGSAQEEGINHLASDTVHYDPTDLYSWVQTMLTELNPSTDSQINDPLDASSSIFNDNSQYDLSVIPGMAAYPPQTQNQNNESEGSVSNKRLKTWESETESDVFLPALSPPVETTRPVVLVDSQETGVRLIHTMMACADAIHRDDLKIADTLVKSIGILAPSQTGAMGKVASYFAQAFYRRIYRVSPDETIDSSLSDALHMHFYESCPYLKFAHFTANQAILEAFAGAASVHVIDFGLKQGMQWPALMQALALRPGGPPTFRLTGIGPPQTGNTDALQQVGWKLAQLAQTIGVQFKFSRIRLHQSCGS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g01545 390 Gene3D - 53 118 IPR038088 -
Vifa2g01545 390 MobiDBLite consensus disorder prediction 8 41 - -
Vifa2g01545 390 MobiDBLite consensus disorder prediction 153 170 - -
Vifa2g01545 390 ProSiteProfiles GRAS family profile. 203 390 IPR005202 -
Vifa2g01545 390 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 152 382 IPR005202 -
Vifa2g01545 390 MobiDBLite consensus disorder prediction 152 173 - -
Vifa2g01545 390 MobiDBLite consensus disorder prediction 1 48 - -
Vifa2g01545 390 Pfam GRAS domain family 212 382 IPR005202 -
Vifa2g01545 390 Coils Coil 70 90 - -
Vifa2g01545 390 FunFam DELLA protein GAI 53 118 - -
Vifa2g01545 390 SMART DELLA_2 55 128 - -
Vifa2g01545 390 Pfam Transcriptional regulator DELLA protein N terminal 55 122 IPR021914 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g01545 Vifa-Chr2 416680996 416682168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g01545 56 379 GRAS Transcription Factor Family AT3G03450 58.359 2.53e-128 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vifa2g01545 GRAS 2.2e-57 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g01545 K14494 - gmx:100799695 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g01545 2 416680996 416682168 Vifa2g01545 2 416680996 416682168 ECH
Vifa2g01545 2 416680996 416682168 Vifa6g00759 6 269919491 269921620 ECH