Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00642 ATGATTGAAAGTAAAGATCCTGAAATTAATCTATTCGGGCAGAAGATTCTCTTTCTTGGGGAAGGTGAAGCTATGGATGTAGAAGAAGAAGAAGAAAGAGATAGATATTTTAGTGAATCCGAGAGTGAAGATGAAGAAACAACAAAGGACAATGAAGCTGAAAAGGACACTGAGAAAAGTAAAGAAGTTGATCCTTCACCAAATTCTGCAGAGATCAAGAACAACTATTCAGTAACAACATCAACATTAGCAGAAGCTATTCAGAATCCAAAAACACCATCTCTTGATGAAGAAATATCAAAATCCGAAAACGAACAAAGTGATGTAGCAGCAACAACAAACAACAACAACAACAATAATCATGAGAAAACACTTAAGAAGCCCGACAAATTACTCCCATGTCTGCGCTGCAACAGCGGGGACACAAAATTCTGTTACTATAACAACTACAATGTCAACCAGCCGCGCTATTTCTGCAGAGCGTGTCAAAGATACTGGACTGCAGGCGGAACTATGAGGAATGTTCCAGTTGGTGCAGGGAGAAGAAAGAACAAAAACAACTCTTTGTCATCACATTATCGCCACATCACTATCTCTGAGGCACTTGATGCAGCAAGAGTTTTTTCTCCTGATGAAACTCATTATGTTCCAAATTTGAAAACCAATGGTAGACTCCTTAGCTTTGGATTGGATCGCCCATCAATCTGTGATTCAATGAAAAATGCCAACAGTCATGCAGAGAAAAAGGGTCTTAGCGACACTCATGATGATCATTGTTCAAGTTCATCTTCTATTACAGTTTCAAAATCTATGGAACAAAGTGGCAAAAACATGTCACAAGAATCATTACCATCGCAAAATAGTGGTTTTGTTCCTCAAGTTCCATGCATTACTAGCGTTCCTTGGCCTTACCCTTGGAGTTCTTCCGCGATTCCCATGCCGCAAACATTGTGTCCTCCTGGATTTCCCATGTCATTCTACCCTACTCCATTTTGGAACTGCGGTGTTCCGGGAAATTGGAATGTTCCTTGGTTCCCCTCTCATACTTCGGCAACAAGTCCTAGTTTATCAAACTCTAGTACGAATTCTCCAACGCCCGGGAAACGCTCGAGGAATTATGATGATGAGAACAATGATGAGACGGCTAAACAAGACGATTTTGGAAAAGAAGAATCACCAAGACAAAGAAGTGGTAATGTTTTGGTTCCAAAAACATTGAGAGTTGATGATCCAAATGAAGCTGCAAAGAGTTCTATATGGGAAACACTTGGAATCAAGAATGAATGTGTGAGTAAGGGAGGCATGACCAAAGCTTTTCAACCAAAGAAAGATGGAAAAGAACATGTTGAAACTTCTCCATTGTTGATGGCTAATCCTGCAGCTTTGGCTAGATCACTTAATTTTCATGAAAATTCTTAA 1419 0.3975 MIESKDPEINLFGQKILFLGEGEAMDVEEEEERDRYFSESESEDEETTKDNEAEKDTEKSKEVDPSPNSAEIKNNYSVTTSTLAEAIQNPKTPSLDEEISKSENEQSDVAATTNNNNNNNHEKTLKKPDKLLPCLRCNSGDTKFCYYNNYNVNQPRYFCRACQRYWTAGGTMRNVPVGAGRRKNKNNSLSSHYRHITISEALDAARVFSPDETHYVPNLKTNGRLLSFGLDRPSICDSMKNANSHAEKKGLSDTHDDHCSSSSSITVSKSMEQSGKNMSQESLPSQNSGFVPQVPCITSVPWPYPWSSSAIPMPQTLCPPGFPMSFYPTPFWNCGVPGNWNVPWFPSHTSATSPSLSNSSTNSPTPGKRSRNYDDENNDETAKQDDFGKEESPRQRSGNVLVPKTLRVDDPNEAAKSSIWETLGIKNECVSKGGMTKAFQPKKDGKEHVETSPLLMANPAALARSLNFHENS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00642 472 MobiDBLite consensus disorder prediction 105 121 - -
Vifa2g00642 472 ProSiteProfiles Zinc finger Dof-type profile. 132 186 IPR003851 GO:0003677|GO:0006355
Vifa2g00642 472 MobiDBLite consensus disorder prediction 257 288 - -
Vifa2g00642 472 MobiDBLite consensus disorder prediction 369 393 - -
Vifa2g00642 472 MobiDBLite consensus disorder prediction 349 368 - -
Vifa2g00642 472 MobiDBLite consensus disorder prediction 18 125 - -
Vifa2g00642 472 ProSitePatterns Zinc finger Dof-type signature. 134 170 IPR003851 GO:0003677|GO:0006355
Vifa2g00642 472 PANTHER CYCLIC DOF FACTOR 2 5 472 IPR045174 GO:0003700|GO:0006355
Vifa2g00642 472 MobiDBLite consensus disorder prediction 349 409 - -
Vifa2g00642 472 Pfam Dof domain, zinc finger 130 186 IPR003851 GO:0003677|GO:0006355
Vifa2g00642 472 MobiDBLite consensus disorder prediction 52 66 - -
Vifa2g00642 472 MobiDBLite consensus disorder prediction 67 95 - -
Vifa2g00642 472 MobiDBLite consensus disorder prediction 23 51 - -
Vifa2g00642 472 MobiDBLite consensus disorder prediction 247 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00642 Vifa-Chr2 146290930 146293098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00642 1 470 C2C2-Dof Transcription Factor Family AT3G47500 43.340 6.83e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa2g00642 zf-Dof 3.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g00642 - - gmx:100817354 480.33