Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00602 ATGAAGATGAAGAAGCTTAAGTTCAGCAAGATATATTCATTTAGATTTGGTCAAAAAGCAAACTTTAGGACTGAAAATCCACAGATTGGAAAACAAGGGTTTTCTAGGGTTGTTTTATGCAATGAACCAGATAGTTTTGAATCAGATTTTAGGAATGGTTATGCTGATAATTCTGTTAGGTCAACAAAATATACAGTTGCTAATTTCTTGCCTAAGTCTTTGTTTGAGCAGTTTAGGAGGGTAGCTAATTTCTTTTTCCTTGTTACTGGTATCTTAGCTTTCACTAAACTTGCTCCTTATACGGCGGTTAGCGCTATTCTTCCTCTATGTATTATCACTGGTGCAACTATGGTGAAAGAAGGTGTTGAAGATTGGCGTCGGAAAAAGCAGGATATTGAGGTGAACAATAGAAGAGTTATATTTCACAAAGGTGATGGAAATTTCGAATATACGGAGTGGAAGAATCTCAAGGTGGGGAGTATAGTGAAGGTAAAGAAGGATGAGTTCTTCCCTGCTGATCTCCTATTGCTTTCATCGAGTTATGACGATGCAGTGTGCTATGTTGAGACTATGAACTTGGATGGGGAAACAAATTTGAAGCTAAAACAAGGATTGGAAGTAACCTCTTCCTTAAACGAGGACTTTATATTCCGCGATTTCAAAGCTTCCGTCAAATGTGAAGATCCAAATGCAAATTTGTACTCATTTGTTGGGAGCATGGAGTTTGAAGGACAAAAGTATCCCCTTTCTCCTCAACAACTTCTTCTACGAGACTCTAAACTTCGTAACACAGACTATGTATATGGAGCAGTCATCTTTACCGGTCATGACACGAAGGTTATTCAAAATGCCACTGACCCTCCTTCGAAAAGAAGCAAAATAGAGAAGAAGATGGATAGGATTATCTACTTCTTATTTTGTGTTTTATTTATAATTGCTTTTGTTGGTTCTATTCTCTTTGGAATTGTAACTAAACGCGACTTACACAACGGAGTTATGAAAAGATGGTATCTAAGACCAGATGATTCCACCATTTTCTTCGATCCTGGAAAAGTTGCTGCAGCTTCTGTATTTCATTTTTTGACGGCCTTAATGTTATATAACTTCTTCATTCCGATCTCCTTGTATTTCTCAATAGAATTGGTCAAAGTCCTTCAATGCATCTTCATTAATCAAGATATCAATATGTACTATGAAGAACTGGACAAACCGGCTCTTGCCCGTACTTCAAACTTGAATGAAGAACTGGGCCAAATTGACACGATCCTTTCTGATAAAACTGGAACTTTGACTTGCAACTCAATGGAGTTCATCAAATGTTCGGTTGCCGGGGTAGCTTATGGTCGTGGTGTCACTGAGGTTGAGCAAGCCATTGGTAATATAAGTAATAATTCACCTATAATACATCAACAAGTTAATAGGTTGGAACCAAAATCAGATATCAGAGAAGCTCATGATCAAAAAGAACCGATCAAAGGTTTTAACTTTGTGGATGAAAGGATAATGAATGGAAACTGGGTTAATGAGCCTTGTGCGGATGTTATACAGAAGTTTTTCCGTTTATTGTCTGTTTGTCATACTGCCATACCTGAAGTAGATGAAGATACCGGAAGAGTCTCATATGAGGCTGAATCTCCTGATGAAGCGGCATTTGTGATTGCTGCAAGAGAAGTTGGTTTTAAATTCTATAAAAGGACCCAAAATAGTTTATCGTTGAAAGAGTTGGATCCGGTATCTGGTAATGAAGTTGAAAGGACATACAAGATTCTCAATGTCTTAGAATTCAATAGTTCAAGGAAGAGAATGTCGGTGATAGTGAAAGATGAAGAAGGGAAAATTTTGCTACTCTCTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCAAGAATGGGAGAGAATTTGAAGAGAAAACTTTGGAACATATGAATGAGTATGCTGATGCAGGTCTAAGAACGTTGATACTGGCCTACCGTGAACTTGATGAAGAAGAATATAATGAGTTTGACAATAAATTTTCCGAAGTGAAGAATTCAGTCACCGTAGACCGTGAATCGTTGATTGAGGAAGTATCAGATAAGATTGAGAAGAATCTAATCCTTCTTGGGGCCACTGCTGTAGAGGACAAGCTCCAAAACGGGGTTCCTGAGTGTATTGACAAGCTTGCACAGGCTGGAATTAAGATATGGGTTTTGACTGGGGACAAAATGGAGACTGCCATCAACATCGGTTTTTCTTGTCGCTTGCTTCGCCAAGGAATGAAACAGATTATAATTCATTTGGAGATTCCAGATATTCAAGCATTGGAGAAGGATGGAGACAAGAAGGCTATCATCAACGCGTCAAGGGAAAGCGTGTATCATCAGATATCGGAAGAGGATAATACAAAGAACATGTTTTTAGAGCTCGCAACTCGCTGTTCATCTGTTATCTGCTGCCGCTCTTCACCAAAGCAGAAGGCACTGGTTACTAGACTGGTCAAAGAAGGAACAGGTAAAACAACATTAGCTATTGGTGATGGCGCTAATGATGTGGGAATGCTTCAAGAAGCTGATGTAGGTGTTGGAATCAGTGGTGTTGAAGGAATGCAGGCCGTTATGTCTAGTGATATTGCAATTGCGCAGTTCCGATATTTAGAAAGATTACTTCTTGTACACGGGCATTGGTGTTACCGGAGGATGTCCACAATGATATGTTACTTTTTCTACAAGAATATCACATTTGGCTTCACTCTATTCTTATATGAGGTGTATGCGTCATTCTCTGGACAGCCTGCATACAATGACTGGTTTCTATCTTTCTATAGTGTCTTGTTTTCCTCACTTCCCGCCATTGCCCTCGGGGTCTTCGACCAAGATGTATCTGCTCGGTACTGCCACAAGTTTCCCTTCTTATACCAAGAAGGTGTGCAAAATGTTCTATTCAGCTGGCGCCGGATTCTAAGCTGGATGCTCAACGGATTCATCAGCGCCATAATAATCTTCTTCTTCTGCACAAAAGCAATAGGCCTTCAAGCCTTTGACGATAACGGACAAACCGCCGGAAAAGCCATGCTAGGACAAACCATGTATACATGTGTCGTCTGGGTTGTAAACCTACAGATGGCGCTATCGGTTCGATACTTCACCTTGGTACAACATATTGCCATTTGGGGTTCTATTGCTCTTTGGTATTTCTTCATGTTTGCATATGGATCATTGCCTCCAAGCTTTTCCACAAATGCTTACAAAGTCTTTGTCGAGACTCTTGCTCCGACTCCTTCCTTTTGGATTGTCACGCTATTCGTGACGCTTTCTTCGCTTATACCGTACTTTTCGTCTTCGACCATAAAAATGTGGTTCTTTCCTATGCATCACGAAAAGGTACAATGGATGAGGTATGGGGACAAGAAGACTAATGATTCTGAATAG 3411 0.399 MKMKKLKFSKIYSFRFGQKANFRTENPQIGKQGFSRVVLCNEPDSFESDFRNGYADNSVRSTKYTVANFLPKSLFEQFRRVANFFFLVTGILAFTKLAPYTAVSAILPLCIITGATMVKEGVEDWRRKKQDIEVNNRRVIFHKGDGNFEYTEWKNLKVGSIVKVKKDEFFPADLLLLSSSYDDAVCYVETMNLDGETNLKLKQGLEVTSSLNEDFIFRDFKASVKCEDPNANLYSFVGSMEFEGQKYPLSPQQLLLRDSKLRNTDYVYGAVIFTGHDTKVIQNATDPPSKRSKIEKKMDRIIYFLFCVLFIIAFVGSILFGIVTKRDLHNGVMKRWYLRPDDSTIFFDPGKVAAASVFHFLTALMLYNFFIPISLYFSIELVKVLQCIFINQDINMYYEELDKPALARTSNLNEELGQIDTILSDKTGTLTCNSMEFIKCSVAGVAYGRGVTEVEQAIGNISNNSPIIHQQVNRLEPKSDIREAHDQKEPIKGFNFVDERIMNGNWVNEPCADVIQKFFRLLSVCHTAIPEVDEDTGRVSYEAESPDEAAFVIAAREVGFKFYKRTQNSLSLKELDPVSGNEVERTYKILNVLEFNSSRKRMSVIVKDEEGKILLLSKGADSVMFERLAKNGREFEEKTLEHMNEYADAGLRTLILAYRELDEEEYNEFDNKFSEVKNSVTVDRESLIEEVSDKIEKNLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFSCRLLRQGMKQIIIHLEIPDIQALEKDGDKKAIINASRESVYHQISEEDNTKNMFLELATRCSSVICCRSSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMLQEADVGVGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSTMICYFFYKNITFGFTLFLYEVYASFSGQPAYNDWFLSFYSVLFSSLPAIALGVFDQDVSARYCHKFPFLYQEGVQNVLFSWRRILSWMLNGFISAIIIFFFCTKAIGLQAFDDNGQTAGKAMLGQTMYTCVVWVVNLQMALSVRYFTLVQHIAIWGSIALWYFFMFAYGSLPPSFSTNAYKVFVETLAPTPSFWIVTLFVTLSSLIPYFSSSTIKMWFFPMHHEKVQWMRYGDKKTNDSE 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00602 1136 CDD P-type_ATPase_APLT_Dnf-like 56 987 - -
Vifa2g00602 1136 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 31 1127 - -
Vifa2g00602 1136 Pfam Phospholipid-translocating P-type ATPase C-terminal 866 1116 IPR032630 -
Vifa2g00602 1136 SFLD p-type atpase 405 889 IPR044492 -
Vifa2g00602 1136 Pfam Phospholipid-translocating ATPase N-terminal 41 105 IPR032631 -
Vifa2g00602 1136 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 703 IPR023299 GO:0000166
Vifa2g00602 1136 FunFam Phospholipid-transporting ATPase 544 702 - -
Vifa2g00602 1136 Pfam Cation transport ATPase (P-type) 537 628 - -
Vifa2g00602 1136 SUPERFAMILY Calcium ATPase, transduction domain A 141 283 IPR008250 -
Vifa2g00602 1136 SUPERFAMILY Calcium ATPase, transmembrane domain M 52 1116 IPR023298 -
Vifa2g00602 1136 PRINTS P-type cation-transporting ATPase superfamily signature 838 857 - -
Vifa2g00602 1136 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Vifa2g00602 1136 PRINTS P-type cation-transporting ATPase superfamily signature 725 735 - -
Vifa2g00602 1136 SUPERFAMILY HAD-like 418 893 IPR036412 -
Vifa2g00602 1136 NCBIfam phospholipid-translocating P-type ATPase 54 1123 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vifa2g00602 1136 FunFam Phospholipid-transporting ATPase 115 285 - -
Vifa2g00602 1136 Gene3D - 548 702 IPR023299 GO:0000166
Vifa2g00602 1136 SFLD C1.7: P-type atpase like 405 889 - -
Vifa2g00602 1136 FunFam Phospholipid-transporting ATPase 702 878 - -
Vifa2g00602 1136 Gene3D - 115 285 - -
Vifa2g00602 1136 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Vifa2g00602 1136 NCBIfam HAD-IC family P-type ATPase 810 920 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa2g00602 1136 Gene3D - 703 878 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00602 Vifa-Chr2 131434229 131438948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00602 6 1136 Primary Pumps ATPases AT1G68710 70.245 0.0 1736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00602 2 131434229 131438948 Vifa2g00602 2 131434229 131438948 ECH