Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00297 ATGGCTACTCTTATTGCTCCTAGCAACAACCATTCCCCAGTTGAGGATGCAGAAGCCCTTCATAAAGCTTTCAAAGGGTTTGGTGCTGATGAGAAGACCATTATAGCAATATTGGGTCATAGAAATGTTCATCAAAGGCAACAAATTAGAAAGACTTATGAGCAGCTTTTCGAAGAAGATCTCATCAAACGTCTTGAGTCAGAGATCTCTGGTGATTTTGAGAAAGCTGTGTACCGCTGGATGTTGGAACCTGCAGACCGCGATGCAGTTCTGATCAATGTAGCAACCAAGCATGGCAGCAAAGACTATCACATTGTTGCTGAAATCGCTTCTGTGCTATCAGCCGAAGAGCTTTTGGCCGTGAGGCGCGCCTATCGTATCCGCTACAAGCGTTCCATTGAAGAAGACGTGTCTGCTAACACCACCGGTCATCTTCGTCAGCTTTTGGTTGGATTGGTGAGCTCATATAGGTACGAAGGAGACGAAATCAATCCGAAATTAGCACAAACCGAAGCTAGTATCATTCATGAAAGTCTCAAAGAAAAGAAAGGAAACAATGAAGAAGAAGTCATTAGGATTCTCACTACAAGAAGCAAGACTCAACTTGTGGCCACTTTCAACCGCTATAGAGACGAACACGGCGTCTCCGTCAGTAAGAAATTGTTGGATCAAACATCTGATGATTTCCACAAGGCATTGCACACGGCTATTCGTTCGATCAATGATCACAAAAAGTACTACGAGAAGGTTTTGCGCAATGCGATCAAAAAGTTTGGAACCGATGAGGATGGACTAAGCCGCGTGATTGTTACTAGGGCTGAGAAGGATTTGAGGGACATCAAGGAGCTATACTACAAGAGAAACAGTGTTCATCTTGAAGATGCAGTCTCCAAGGAAACTTCAGGAGATTACAAGAAGTTCATTCTTGCTCTTTTGGGGAAGCAAGAGTAA 951 0.4364 MATLIAPSNNHSPVEDAEALHKAFKGFGADEKTIIAILGHRNVHQRQQIRKTYEQLFEEDLIKRLESEISGDFEKAVYRWMLEPADRDAVLINVATKHGSKDYHIVAEIASVLSAEELLAVRRAYRIRYKRSIEEDVSANTTGHLRQLLVGLVSSYRYEGDEINPKLAQTEASIIHESLKEKKGNNEEEVIRILTTRSKTQLVATFNRYRDEHGVSVSKKLLDQTSDDFHKALHTAIRSINDHKKYYEKVLRNAIKKFGTDEDGLSRVIVTRAEKDLRDIKELYYKRNSVHLEDAVSKETSGDYKKFILALLGKQE 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00297 316 Gene3D Annexin 244 314 IPR037104 GO:0005509|GO:0005544
Vifa2g00297 316 Gene3D Annexin 83 154 IPR037104 GO:0005509|GO:0005544
Vifa2g00297 316 ProSiteProfiles Annexin repeat profile. 166 238 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 SMART annex3 184 236 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 SMART annex3 259 311 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 PANTHER ANNEXIN 13 311 - -
Vifa2g00297 316 FunFam Annexin 83 153 - -
Vifa2g00297 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 FunFam Annexin 1 82 - -
Vifa2g00297 316 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Vifa2g00297 316 Pfam Annexin 88 152 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 Pfam Annexin 172 234 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 Pfam Annexin 249 311 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 Pfam Annexin 16 77 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 Gene3D Annexin 166 241 IPR037104 GO:0005509|GO:0005544
Vifa2g00297 316 FunFam Annexin 243 314 - -
Vifa2g00297 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Vifa2g00297 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Vifa2g00297 316 PRINTS Annexin family signature 299 312 IPR001464 GO:0005509|GO:0005544
Vifa2g00297 316 PRINTS Annexin family signature 255 275 IPR001464 GO:0005509|GO:0005544
Vifa2g00297 316 PRINTS Annexin family signature 175 201 IPR001464 GO:0005509|GO:0005544
Vifa2g00297 316 SUPERFAMILY Annexin 2 314 IPR037104 GO:0005509|GO:0005544
Vifa2g00297 316 PRINTS Plant annexin signature 161 181 IPR009118 -
Vifa2g00297 316 PRINTS Plant annexin signature 227 245 IPR009118 -
Vifa2g00297 316 PRINTS Plant annexin signature 119 133 IPR009118 -
Vifa2g00297 316 ProSiteProfiles Annexin repeat profile. 242 313 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 FunFam Annexin 166 241 - -
Vifa2g00297 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
Vifa2g00297 316 ProSitePatterns Annexin repeat signature. 259 311 IPR018252 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00297 Vifa-Chr2 48462840 48464822 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00297 2 48462840 48464822 Vifa2g00297 2 48462840 48464822 ECH
Vifa2g00297 2 48462840 48464822 Vifa4g00830 4 245966824 245968518 PCT