Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00223 ATGGGAACTGAAAAGCTTAGATCTTATGCAAACTTTCTTGAGAACTCTATGCCTTATTTTGCCATGATCCTTTTGCAGTTTGGCTATGCAGGCATGAACATTATAACCAAGCTTTCTCTCAATGGTGGCATGAGTCACTATGTTCTTGTTGTTTATCGCCATGCTTTTGCAACCATCGCTATAGCTCCATTCGCCATTATCTTCGAAAGGAAGGCTCAACCAAAGATTACATTTCCAATTTTCATGCAAATTTTTCTCCTAGCTTTGCTTGGGCCAGTGATAGATCAAAATTTATACTATGCTGGGCTGAAATTAACATCTCCAACTTTCTCATGTGCAATGAGCAATATGCTTCCTGCCATGACTTTCGCAATCGCGGTTTTATGCCGAATGGAAATTATAAACATGAAGAAGTTGAGATGCCAAGCAAAGGTGGTTGGAACTTTATTAACTGTGGCTGGAGCAATGTTGATGACATTATATAAAGGTCCCATTTTGGATTTGCTATGGACTAAAGATACACCTCATAGTAATCAAATTTCGACAAACATCACAAGATCTTCAAGCAAAAATAATTGGCTCATTGGTTCCATTTTACTCATTATTGCTACACTTGCATGGTCATCCCTCTTTGTGTTACAAGCTAGGGCTATAGAAACATACAAGAATCATCAGCTAACACTCACATCACTTATATGTTTCTTTGGGACACTTCTAGCTTTTGTTGCAACTTTGGTTATGGAACACAGAGTTTCTGTTTGGACAATTGGTTGGGATATGAACTTGTTAGCTTCTGCATATGCTGGGATAGTTGCATCAAGTATATCATACTATGTACAAGGATTGGTAATAAAAAAGAAAGGGCCTGTTTTTGCAACTTCATTTAGTCCTTTGATGATGATCATTGTAGCAATCATGGGTTCATTTTTCCTTGCAGAGCAGATTTTTCTTGGAAGTGCAATTGGTTCCATCTTAGTTGTGATAGGATTATATTCTGTTTTATGGGGAAAGCACAAAGAACAAATGGAAAGTAAAGTGGCACCCGATGATAAACCATTGCCAATAAAGGGTGTTTGGGTGAATGGAAATAAAGGGACACTTTCTGAAGCCATTGATCAACTTAGTGAAGCAAAATCAGATCAGAAAGTAGAATCAAACATTTCACTTGTTATTATTAATTACAACAAAAGTTAA 1194 0.3702 MGTEKLRSYANFLENSMPYFAMILLQFGYAGMNIITKLSLNGGMSHYVLVVYRHAFATIAIAPFAIIFERKAQPKITFPIFMQIFLLALLGPVIDQNLYYAGLKLTSPTFSCAMSNMLPAMTFAIAVLCRMEIINMKKLRCQAKVVGTLLTVAGAMLMTLYKGPILDLLWTKDTPHSNQISTNITRSSSKNNWLIGSILLIIATLAWSSLFVLQARAIETYKNHQLTLTSLICFFGTLLAFVATLVMEHRVSVWTIGWDMNLLASAYAGIVASSISYYVQGLVIKKKGPVFATSFSPLMMIIVAIMGSFFLAEQIFLGSAIGSILVVIGLYSVLWGKHKEQMESKVAPDDKPLPIKGVWVNGNKGTLSEAIDQLSEAKSDQKVESNISLVIINYNKS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00223 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
Vifa2g00223 397 SUPERFAMILY Multidrug resistance efflux transporter EmrE 233 339 - -
Vifa2g00223 397 PANTHER WAT1-RELATED PROTEIN 17 342 IPR030184 GO:0016020|GO:0022857
Vifa2g00223 397 Pfam EamA-like transporter family 195 334 IPR000620 GO:0016020
Vifa2g00223 397 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00223 Vifa-Chr2 27548636 27551575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00223 1 374 Nodulin-like Gene Family AT5G07050 65.969 9.99e-177 496
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00223 2 27548636 27551575 Vifa2g00223 2 27548636 27551575 ECH
Vifa2g00223 2 27548636 27551575 Vifa4g00533 4 147295799 147298009 PCT