Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00176 ATGAGTCGTGTGAAAAAGGAGAATGAAGATGATATGCGCTGCAATGATCAATCACAGTCACGGTTGAATGGTGAGGGTAACAGGGGAAGTGTTGGTGTTGGTGTTGGTGGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACAACTGCAGAAGATGCTATTTTGGTTGAATACGTCCGGAAACATGGCGAGGGGAACTGGAATGCTGTTCAGAAGCATTCGGGCCTGTCTCGGTGTGGAAAAAGCTGCCGACTGCGATGGGCGAATCACTTGAGGCCAAATTTGAAGAAAGGATCATTTACTGCAGATGAGGAGCAGTTGATTGCTCAACTCCATTTAGAAATGGGAAACAGATGGGCACGTATGGCAGCGCACTTGCCTGGTCGTACAGATAACGAAATAAAGAACTACTGGAATACCCGGACCAAGAGGCGTAATCGGGCTGGCTTGCCACTTTATCCTCCAGAAGTGCGGAAAAAGCAAGGGAGTCAACGTGGCCAAGACACTGTTGGAATCGATAATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATGCATGATGTAATGTTTGACAATTTGAAAGAAAATCAACGAATCTTACCTATTACAGTTGTGCCTGAGAATCCTGATATTTCTGCGAATAGCATTCTGCTAAACAGTCTTGATTCTCCTCCATATTGTAATTCTGTGCCATCAACCCTACCTAACCATCACCACCTTCGAGAATCAACAATGTCTTTTCTTGGTTCAAGTGGAACAAACAAGAATTGGTTTTATCCATTTTACCATGTTCAGGATCATAGTTCTGATACGATTGTACAATCATTCGGTTTGCATTCTCCCCTCGATCCTGGTTTCTCCTCACACAACTCAATGTATTACCGCCATTCCCTATCAAATGGCAATTCCTCCACTTCTAAGCCGACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGAAGTACTTTTCCCTCACCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCTAGAGTCCGGTTGTTCTTCCCCACGTAATAGTGGGACACTCGAGGACATAATTTATCAGAAGAAGACTCTTCCAAATTCAATGAACAACTGTTCTGACAAGAGTTCTCATTCATCTACTGCAACTCCTGTTGAAAGAGCTGAGAGTTCTGCTTTGAACATGAATGAAACAGAATGGGAAGATTACACTGACCATGCATCTTCCTTTGGTGCAACCTCAATCCTGAATGAGTGTCATGCTGTTAACACCAACGCAAACTCATGGGATAAATTGACACCTGCTCAGAACTTTAATGGCAACAATGTGAAATATGAGCCTATTGACCAAGTTTGTACCCCAAAGAGTGAAAATCAAGGTATGTCTATGTTGAACATCACTTGGCCAGATGTATTGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCATGAGAAGAACATGGCTGAGGCTGGTGACAACTTAGCAGATTATAAACATGTGGCTGGTGGTACTTATTCTTCAAGTACAGGGGGTTGCTTTATGCACATGGCATAA 1611 0.4407 MSRVKKENEDDMRCNDQSQSRLNGEGNRGSVGVGVGGGVVLKKGPWTTAEDAILVEYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTADEEQLIAQLHLEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRNRAGLPLYPPEVRKKQGSQRGQDTVGIDNGDRGHHDFLPKNNYEMHDVMFDNLKENQRILPITVVPENPDISANSILLNSLDSPPYCNSVPSTLPNHHHLRESTMSFLGSSGTNKNWFYPFYHVQDHSSDTIVQSFGLHSPLDPGFSSHNSMYYRHSLSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGSTFPSPPLNESVDVFNQSPLPHGALESGCSSPRNSGTLEDIIYQKKTLPNSMNNCSDKSSHSSTATPVERAESSALNMNETEWEDYTDHASSFGATSILNECHAVNTNANSWDKLTPAQNFNGNNVKYEPIDQVCTPKSENQGMSMLNITWPDVLLASDWHEQCYGHEKNMAEAGDNLADYKHVAGGTYSSSTGGCFMHMA 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00176 536 MobiDBLite consensus disorder prediction 151 178 - -
Vifa2g00176 536 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Vifa2g00176 536 MobiDBLite consensus disorder prediction 1 29 - -
Vifa2g00176 536 SUPERFAMILY Homeodomain-like 42 137 IPR009057 -
Vifa2g00176 536 FunFam Transcription factor GAMYB 98 144 - -
Vifa2g00176 536 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Vifa2g00176 536 Pfam Myb-like DNA-binding domain 43 90 IPR001005 -
Vifa2g00176 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 145 IPR017930 -
Vifa2g00176 536 ProSiteProfiles Myb-like domain profile. 41 90 IPR001005 -
Vifa2g00176 536 SMART sant 95 143 IPR001005 -
Vifa2g00176 536 SMART sant 42 92 IPR001005 -
Vifa2g00176 536 Gene3D - 98 144 - -
Vifa2g00176 536 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 94 IPR017930 -
Vifa2g00176 536 MobiDBLite consensus disorder prediction 1 16 - -
Vifa2g00176 536 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 9 506 - -
Vifa2g00176 536 MobiDBLite consensus disorder prediction 384 409 - -
Vifa2g00176 536 FunFam MYB-related transcription factor 42 95 - -
Vifa2g00176 536 CDD SANT 45 90 IPR001005 -
Vifa2g00176 536 Gene3D - 42 95 - -
Vifa2g00176 536 CDD SANT 98 139 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00176 Vifa-Chr2 23579152 23582361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00176 36 514 MYB Transcription Factor Family AT3G11440 41.948 5.70e-104 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa2g00176 Myb_DNA-binding 2.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00176 2 23579152 23582361 Vifa4g00517 4 143184355 143187250 PCT