Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00164 ATGTCACCATCATTTTCCCTTCTCTTTTTCATCTTCTTAGCACCATTATTACTTCTAGCACAATCTTCATCTCCATTTAATTCTTCTTCTCCTTCTTCTTCCTCTTCAGCCGCGTGTAAAGCGACATTATATCCAAAATTATGTCGTTCGATGTTATCTACCATCGGATCATCTTCTTCTGATCCATACAACTACGGAAAATTCTCCATAAAACAAAACCTCAAACTAACAAAAAAACTCTCAAAAGTATTTATCGATTTCCTGAATCGCCACCAATCCTCCTCATCTCTAAACCACGAAGAGTTTGGTGCATTAGTTGATTGCAAAGACCTTAACCAACTCAATGTAGACTACTTAGAATCAATCTCTGATGAACTCAAATCAGCCACTAGTTCATCATCATCAAATACCGAACTTGTTGATAAAATCGAAAGCTATCTTAGTGCTGTTAGTACTAATCACTACACTTGCTTTGATGGGTTGGTTGTCACAAAAAGTAACATTGCTAATGTTCTTGCTGTTCCATTGAAAGATGCTACACAGTTTTATAGTGTTTCACTTGGATTGGTTAGTGATGCTTTGAATAAACACATGAAGACAAATAAGACAAGGAAACATGGTCTTCCTAATAAGTCATTCAAAGTTAGACAGCCACTTGAAAAGCTTATCAAGCTTCTCAGGACAAAATATAGTTGCAACAAAACATTAAATTGTACAAGTAGTAGAAGTGAAAGGATTCTTAAACAAAGTGAAAGCCAAGGAATTCTACTAAACGATTATGTGCTTGTGAGTCCTTATGGAAATGCAAACCACACTTCCATCGGAGATGCTATTGCTGCTGCACCAAATAACTCAACTCCACAAGATGGTTATTTTCTTATCTATGTTAGAGAAGGTTACTATGAAGAATATGTCATTGTTCCTAAAGAAAAGAAGAATATTCTTCTTGTTGGAGATGGTATCAACAAAACAATCATCACAGGGAATCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCCACCTTTGCTGTTTCTGGAGAAAGATTTATAGCAGTGGACATTACATTCAGAAACACAGCAGGTCCTGAAAAACATCAAGCAGTAGCTGTCCGAAGCAACGCAGATCTCTCGACATTCTACCGATGCAGCTTCGAAGGATATCAAGACACACTCTATGTCCATTCATTAAGACAATTCTATAGGGACTGCAAAATCTACGGAACCGTCGACTTCATTTTCGGCAACGCAGCTGTAGTTTTCCAGAACTGTAACATCTATGCTAGAAAGCCACTTCCAAATCAGAAAAATGCTGTGACAGCACAAGGAAGAACTGATCCAAATCAAAACACTGGAATCTCAATCCAAAACTGCACTGTTGATGCTGCACCTGATTTGGCTGATGACTTGAATTCGACATCGAGTTACTTAGGTAGACCATGGAAGATTTATTCAAGAACTGTTTATATGCAATCATACATTGGTGATTTTGTTGACCCTGCTGGTTGGTTAGAATGGAATGGAACACTTGGTTTAGATACTATTTTTTACGGCGAGTTTGATAACTATGGACCTGGTTCTTCAACTGATAATAGGGTTCAATGGCCTGGTTATTTTCTTTTGAATGATACTCAAGCTTGGAATTTCACTGTTCTTAACTTTACTTTGGGAAATACCTGGCTTCCTGATACAGATATACCTTACACCGAAGGATTACTAAACTAA 1728 0.3733 MSPSFSLLFFIFLAPLLLLAQSSSPFNSSSPSSSSSAACKATLYPKLCRSMLSTIGSSSSDPYNYGKFSIKQNLKLTKKLSKVFIDFLNRHQSSSSLNHEEFGALVDCKDLNQLNVDYLESISDELKSATSSSSSNTELVDKIESYLSAVSTNHYTCFDGLVVTKSNIANVLAVPLKDATQFYSVSLGLVSDALNKHMKTNKTRKHGLPNKSFKVRQPLEKLIKLLRTKYSCNKTLNCTSSRSERILKQSESQGILLNDYVLVSPYGNANHTSIGDAIAAAPNNSTPQDGYFLIYVREGYYEEYVIVPKEKKNILLVGDGINKTIITGNHSVIDGWTTFNSSTFAVSGERFIAVDITFRNTAGPEKHQAVAVRSNADLSTFYRCSFEGYQDTLYVHSLRQFYRDCKIYGTVDFIFGNAAVVFQNCNIYARKPLPNQKNAVTAQGRTDPNQNTGISIQNCTVDAAPDLADDLNSTSSYLGRPWKIYSRTVYMQSYIGDFVDPAGWLEWNGTLGLDTIFYGEFDNYGPGSSTDNRVQWPGYFLLNDTQAWNFTVLNFTLGNTWLPDTDIPYTEGLLN 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00164 575 PANTHER PECTINESTERASE 17 563 - -
Vifa2g00164 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 192 IPR035513 -
Vifa2g00164 575 FunFam Pectinesterase 256 573 - -
Vifa2g00164 575 SUPERFAMILY Pectin lyase-like 259 572 IPR011050 -
Vifa2g00164 575 NCBIfam pectinesterase inhibitor domain 5 173 IPR006501 GO:0004857
Vifa2g00164 575 Pfam Plant invertase/pectin methylesterase inhibitor 36 188 IPR006501 GO:0004857
Vifa2g00164 575 SMART PMEI_2 30 189 IPR006501 GO:0004857
Vifa2g00164 575 ProSitePatterns Pectinesterase signature 2. 407 416 IPR033131 -
Vifa2g00164 575 Pfam Pectinesterase 261 558 IPR000070 GO:0030599|GO:0042545
Vifa2g00164 575 CDD PMEI-like_3 37 191 - -
Vifa2g00164 575 Gene3D - 259 575 IPR012334 -
Vifa2g00164 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 191 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00164 Vifa-Chr2 19455102 19458849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00164 38 575 Carbohydrate Esterase AT3G10720 60.773 0.0 687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00164 2 19455102 19458849 Vifa4g00509 4 140825291 140827351 PCT