Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00163 ATGTCTTCCTTTAAGTCCTATGGAAAAGTTAATGAACTTGATCAAATGATGCTAGAAGCAAAGCGAAAAACCCGAAAGAGAATCACAATCATAAGCTTATCTTCAATAATCTTAGTTACTATTGTAATTGCATCAGTATTTGGAGTTGTTAGCAACAAAAACAACTCGAAAAACGATGATAACAATAACGCGTCACAAAATACCGTGACGAATTCTATGAAAGCTGTTTGTGATGTGACATTGTACAAGGATTCATGTTATGACAGCCTTAGTTCTGTTGTGAACTCATCAGGGAAAGATATTCAACCTGAGGAGTTGTTTAAGTTGTCAATCAATGTGGCTTTGACTTATGTGTCTAAAGCTGTTGAGTATTTCAATGAGCATGGTGTTTTCGAAAAGTTGATGGGTGATAATGATAGTAGAAGTAAGGAAGCTTTGAGAAATTGTAAGGATCTTTTCGAACTTGCTGTTGATCATTTGAATAACTCGTTGATTATGTCAGAAGAAAATTCTTCAGTTCTTCGAGTTTTTGATGATCTTCAAACATGGTTAAGCGCCGCAGGAACATACCAAGAAACATGCATTGAAGGTTTTGAGGATGGAAAAGAAGAGCTTAAGACTTGTGTTACAAGCTATCTTAAAAATTCGACAGAGTACACGAGCAATAGTCTTGCGATAATTACATGGATTAACAAGGTTGCGAGCACTCTAAATTTGAGGCGTTTACTAAGTTTACCTAACGAAAACGAGCCACCGAAATGGTTTCATGCAAAAGATAGGAAGCTGCTTGTTACAAAGGATTTGAGATCAAAAGCTGATATTGTTGTTGCTAAAGATGGTAGTGGAAAATATAGGACTATATCTGATGCACTTAAACATGTTCCTAATAAGAGTAAGAAGAGGATTGTGATTTATGTGAAGAAAGGGATTTACTATGAAAATGTGAGAGTTGAGAAAACAAAATGGAATGTTATGATTATTGGTGATGGTATGACTTCTTCAGTTGTTTCTGGTAGGCTTAACTTTGTAGATGGTACGCCGACTTTTTCATCTGCAACATTTGCTGTGTTTGGGAAGAATTTTATAGCTAGAGACATGGGTTTTCGCAACACGGCCGGTCCACAGAAGCATCAAGCAGTGGCACTAATGACAAGTGCTGATCAAGCAGTTTACTATAAGTGTCACATTGATGCATATCAAGACACTCTTTACGCTCATTCGAATCGCCAATTCTATAGAGAATGCAACATTTACGGAACAGTCGATTTCATTTTCGGAAACTCAGCAGTTGTGATACAAAACTGCAACATTAGGCCAAAGTTACCTATGCATGGGCAACAGATCACAATCACAGCACAGGGTAAAACTGACCCTAACATGAACACAGGTATATCAATTCAATATTGCAACATTTCGCCTTTCGGAAACTTGAGTGATGTTCAGACGTACCTCGGAAGACCGTGGAAGAATTACTCGACAACGGTATACATGAGATCGAGAATGGAAGGTTTTGTTAGTCCAAATGGTTGGTTACCTTGGGTTGGAAACTCGGCGCCAGATACTATTTTTTATGCAGAATTTCAAAATGTTGGAGCAGGTTCTTCAACAAAGAATAGAGTGAAATGGAAGGGTTTGAAAAATATTAGTATTAAAGAAGCTAGTAAGTTTTCTGTTAAGAGTTTTATTCAAGGTGATAGATGGATTCCTGCTTCAAATGCATCTTTTAAGTCTAACATATGA 1740 0.3701 MSSFKSYGKVNELDQMMLEAKRKTRKRITIISLSSIILVTIVIASVFGVVSNKNNSKNDDNNNASQNTVTNSMKAVCDVTLYKDSCYDSLSSVVNSSGKDIQPEELFKLSINVALTYVSKAVEYFNEHGVFEKLMGDNDSRSKEALRNCKDLFELAVDHLNNSLIMSEENSSVLRVFDDLQTWLSAAGTYQETCIEGFEDGKEELKTCVTSYLKNSTEYTSNSLAIITWINKVASTLNLRRLLSLPNENEPPKWFHAKDRKLLVTKDLRSKADIVVAKDGSGKYRTISDALKHVPNKSKKRIVIYVKKGIYYENVRVEKTKWNVMIIGDGMTSSVVSGRLNFVDGTPTFSSATFAVFGKNFIARDMGFRNTAGPQKHQAVALMTSADQAVYYKCHIDAYQDTLYAHSNRQFYRECNIYGTVDFIFGNSAVVIQNCNIRPKLPMHGQQITITAQGKTDPNMNTGISIQYCNISPFGNLSDVQTYLGRPWKNYSTTVYMRSRMEGFVSPNGWLPWVGNSAPDTIFYAEFQNVGAGSSTKNRVKWKGLKNISIKEASKFSVKSFIQGDRWIPASNASFKSNI 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00163 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 70 231 IPR035513 -
Vifa2g00163 579 FunFam Pectinesterase 69 231 - -
Vifa2g00163 579 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
Vifa2g00163 579 Gene3D - 268 579 IPR012334 -
Vifa2g00163 579 CDD PMEI-like_3 75 232 - -
Vifa2g00163 579 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Vifa2g00163 579 SUPERFAMILY Pectin lyase-like 270 575 IPR011050 -
Vifa2g00163 579 PANTHER PECTINESTERASE 35 569 - -
Vifa2g00163 579 FunFam Pectinesterase 267 579 - -
Vifa2g00163 579 NCBIfam pectinesterase inhibitor domain 37 230 IPR006501 GO:0004857
Vifa2g00163 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 72 230 IPR035513 -
Vifa2g00163 579 Pfam Plant invertase/pectin methylesterase inhibitor 72 226 IPR006501 GO:0004857
Vifa2g00163 579 SMART PMEI_2 68 226 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00163 Vifa-Chr2 19451923 19454041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00163 7 579 Carbohydrate Esterase AT3G10710 56.620 0.0 675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g00163 2 19451923 19454041 Vifa4g04210 4 1341181779 1341183768 PCT