Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g00162 ATGAATCCTAAGGTTGGTAATGGTGGTGTCACTTACCCTACAAAGGGAGAAGCCTCAAACAATCCAAAACAAGAAAAGGGAAAAGAAGTAGATGATAAAGAAAAAGAGTTAACTATTGAGGGTCTTGAGACAAGGATATGGAGAGATAAAATGCTATTAAGGAGGATGAAGGAGGAGAGAAGACAAGGTGACAAATGCAAATCATATGAACAATTGAAAAGAAAGACTATGACGCGTGCGCAGGATGGTATCTTAAGACACATGTTAAAGATGATGGAAGCTTGTGACGTTCGCGGATTCATCTATGGAATAGTACCTGAGAATGGGAAACCATTGAGTGGTTCTTCGGACAATCTCCGAGGTTGGTGGAAAGAAAGAGTGAAATTCGACAGAAATGGTCCGGCTGCAATTGCAAAGTATGAAGAAGAAAGTGGAATTTCAAGAATGAAGGAAATGTTGAATGGTGATTCACCAACACCTTACTCGTTGCACGAACTACCTGATACAACATTAGGTTCACTTTTATCATCGTTAATGCAACATTGTGAGCCACCGCAGAGAAGGTTTCCGTTGGACAGAGGAATTTATCCACCGTGGTGGCCAACCGGGAGAGAATCGTGGTGGAACGAAATGGGATTTAGCGAAGATCCTGGTCCACCACCGTATAGAAAGCCGCATGATTTGAAGAAAGCTTGGAAGATTTGTGTTCTGCACTCTGTCATTAAACATATATCTCCGAACATTCAGAAGATTAAGGATGTTGTTAGACATTCGAGGAGTTTACAAGATAAGCTCACGGCTAAGGAAACATCGATTTGGGTTGCTGTTATAAATTACGAGGAAAGACTTGCTAGAAATAAGTATCCTGATTTGTTCGCAGCTCTTAATTCTAGTGCTACTGGAAGTAACTGTCTTCTCGTTGAGACAAATGATTATGATGTTGATGAGGTTGTAGAGCGTAAACGAGCAAAACCATTACCATTGCTAAAACCTCTTTCATCGAGCGATGATGCTAATAGCCTCAGGGTTGAGAAAACTATTCCCCGTCTTGATCATGGCGGTTCTGATGGAAAAATGGCTGATCAAGTTGTTGAGAAAACTAGTCCTCGACGTGAGGCTTTTAAGAGGATTGATAGAAGTGCTTTTATTGGAAGTGGTGGAGAAGAGAACCATGTTCAAACACTTTTCAACAATGGGAATGTGTCTCCAATGAGCAATCTTGATGAAAGTGGTGCTAATAAGAGAAAAGCTAAAGCGCTTGATGAAAATCATGAAGGTTATAGTAATAGTTCTATTAATCTTCAATTCCAATACCATAATCAAGGGCCACCTTATGAGGTTTCTAACAAGAGAAAAGGTGAAGTTGGTAAGAGAAGTATTACTCATAATTATGAGCTTTTCTCTTTGCAAAAAGATAAGAATGAAAGTAACAATCACCTCTTTGGAAGAAACAATCACTTCCAAATGGTTGGAGTTGGAGGCTCAAAAAATCATCAATTTGTCAAAAATGACAAACCTGCTGCTAGAACAACTCTTGAACAAATTGTGAAACCTGCTGCTACAAATCAGATCAATCATCATAGAGGTAATTTCTCAGAAGAAGAAGATGTTTCTGATTTGATGGACATCATTAACTCAGGTATTGAGATGAAGAACACCCCCATGAATGTTATGCCATCTCTCAACATGAACTTTGAGCCTCAAATCTACCCTGCAAGTACTGAGCAGAAGAGAAACAACAAGAGGAATAACAGTTCAATGCCTGTTATGAACATGATTCCAACTCCTGGCTTTAACCAAAACATGCCACCTCAAATGGACAATAATTTCTATGGTCAACAAGGGGGTGCAAATAGCAACTTTAACTACAAAATTCCTATGAATGAAGAAGCTGCCAATGTTCCAATGCATGCAAATGTCTCAACAACAACAGCAACAACAGCCTTTGATTCTCAATCTGATGATGATGCTTATGACAACTATGAATTTATTGATTCTCCTATTGTGGGAACACCAAATTATGATTTATCTATGCTCTTTCATAAGTGA 2049 0.3899 MNPKVGNGGVTYPTKGEASNNPKQEKGKEVDDKEKELTIEGLETRIWRDKMLLRRMKEERRQGDKCKSYEQLKRKTMTRAQDGILRHMLKMMEACDVRGFIYGIVPENGKPLSGSSDNLRGWWKERVKFDRNGPAAIAKYEEESGISRMKEMLNGDSPTPYSLHELPDTTLGSLLSSLMQHCEPPQRRFPLDRGIYPPWWPTGRESWWNEMGFSEDPGPPPYRKPHDLKKAWKICVLHSVIKHISPNIQKIKDVVRHSRSLQDKLTAKETSIWVAVINYEERLARNKYPDLFAALNSSATGSNCLLVETNDYDVDEVVERKRAKPLPLLKPLSSSDDANSLRVEKTIPRLDHGGSDGKMADQVVEKTSPRREAFKRIDRSAFIGSGGEENHVQTLFNNGNVSPMSNLDESGANKRKAKALDENHEGYSNSSINLQFQYHNQGPPYEVSNKRKGEVGKRSITHNYELFSLQKDKNESNNHLFGRNNHFQMVGVGGSKNHQFVKNDKPAARTTLEQIVKPAATNQINHHRGNFSEEEDVSDLMDIINSGIEMKNTPMNVMPSLNMNFEPQIYPASTEQKRNNKRNNSSMPVMNMIPTPGFNQNMPPQMDNNFYGQQGGANSNFNYKIPMNEEAANVPMHANVSTTTATTAFDSQSDDDAYDNYEFIDSPIVGTPNYDLSMLFHK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g00162 682 SUPERFAMILY DNA-binding domain of EIN3-like 161 284 IPR023278 GO:0003700|GO:0005634
Vifa2g00162 682 Pfam Ethylene insensitive 3 41 281 IPR047091 GO:0003700
Vifa2g00162 682 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 26 595 IPR006957 GO:0003700|GO:0005634
Vifa2g00162 682 MobiDBLite consensus disorder prediction 21 35 - -
Vifa2g00162 682 FunFam Ethylene insensitive 3-like 1 154 291 - -
Vifa2g00162 682 Gene3D - 67 146 IPR023278 GO:0003700|GO:0005634
Vifa2g00162 682 Gene3D - 158 291 IPR023278 GO:0003700|GO:0005634
Vifa2g00162 682 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g00162 Vifa-Chr2 19349224 19352151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g00162 29 345 EIL Transcription Factor Family AT3G20770 52.941 1.45e-116 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF EIL Vifa2g00162 EIN3 4.2e-109 No_clan