Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10483 ATGGGTTTGAGTTCTAAACAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACTTTGTTACAAGATCAAAACTTAGAACTACCAAAAGCTTCACCTATGAGAAAACAACAACAACAACAACAACAAAATCATCATCTAGAAGCTGTGAATTGTCCAAGATGTGATTCTTCAAACACCAAATTTTGTTACTACAACAATTACAACAAGTCTCAACCTCGTCATTTCTGCAGAGCTTGTAAGAGACATTGGACTAAAGGTGGAACTCTAAGAAATGTTCCTGTTGGTGGTGTTAGAAAGAATAAAAGAGTCAAAAAATCAAGCTCTACAAAAACTACTATTAGCACCCCCAGAACTTCTATTACCACCCCCACCACCTCAAATACCAAAACCACACCTTCTATGTACGAATCTCTCATTCATCCACCATCTTTTTTTCCATCTCATAATCTGATGAGTACTAGAGATTCATCAGAAGGTAATAATGAAGAGTTTGGTATTGGTAATGGTATCTTTCTGAGTTCATCTATGGATTTACCTCAAAACCAAAGTCTCATATTCCCATTCTCAAACTCAAGCTCTTTGAGATCATCCAATGCATATAACTATGGTGAGGAGTTAAAAGTCATGGAAGATTCAAATATCAACAACACTATAATGCCAAGTACTAGTGGTGCTGGTGCTATTACACAGCCATGGGAGAGCATTCCTGCAGCAGCAAGTAGTGGCATGGACATGTCAAACTACTGGAGTTGGGAAGATATCGATTCTTTGGTCTCAACAGATCTTAATGTTCCTTGGGATGACTCTGATATCAAACCCTAA 822 0.3771 MGLSSKQVSSRGVDWNQTLLQDQNLELPKASPMRKQQQQQQQNHHLEAVNCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKKSSSTKTTISTPRTSITTPTTSNTKTTPSMYESLIHPPSFFPSHNLMSTRDSSEGNNEEFGIGNGIFLSSSMDLPQNQSLIFPFSNSSSLRSSNAYNYGEELKVMEDSNINNTIMPSTSGAGAITQPWESIPAAASSGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10483 273 Pfam Dof domain, zinc finger 48 101 IPR003851 GO:0003677|GO:0006355
Vifa1g10483 273 MobiDBLite consensus disorder prediction 107 132 - -
Vifa1g10483 273 MobiDBLite consensus disorder prediction 99 132 - -
Vifa1g10483 273 ProSitePatterns Zinc finger Dof-type signature. 51 87 IPR003851 GO:0003677|GO:0006355
Vifa1g10483 273 ProSiteProfiles Zinc finger Dof-type profile. 49 103 IPR003851 GO:0003677|GO:0006355
Vifa1g10483 273 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 193 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10483 Vifa-Chr1 1758315245 1758316066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10483 49 153 C2C2-Dof Transcription Factor Family AT1G28310 55.660 4.16e-30 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g10483 zf-Dof 3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10483 - - gmx:778119 305.064