Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10448 ATGGAGCAAGATGGTGGTGGTTGTAGTCGCGGTGGTGGTGATGGACGAAGAGGTGAGATTAACAAGCAAGCTCATAATCATTCTCAGCCTCAGAAGTGTCCTAGGTGTGATTCATTCAACACCAAGTTTTGCTATTACAACAACTATAGCCTCTCTCAGCCCCGTTTCTTCTGCAAAACATGCAGAAGATACTGGACTCAGGGAGGAACATTGAGAAATGTTCCTGTTGGTGGTGGTTGTCGTAAGGGAAAGAGACCTAAAACTTCAGCCACGAGTTCTTCTGGAATTTCCATTGGAAATTCTTCTCTCACTCATGCTCATGCTCATGCTCATGCTCAGTCAGCGCTGCAACAGTCGACTGATCAGTCGACTATGGCTGCGCTGACTAGAGACCCTTCTTCAGTTTTATCTTCTTTTTCCTCTACTGTTCCTTTTTATCAAGGTGGTGTTGGTTATATGTCGTCTTTTGCGGCATTTAATCCGTCTCTGAATCCGAATCTATCACCTCACGGTTTTAATCCGTCACTAAATGCCCCTGGACTTGGTTCTTCTTCAAATTTGGGTCTTTTACAAGGCTTTAACGTTGCTGCTGCTCTTGGAAATTCAACACAAGGACAAAACCGTCCATCTCAGTTTTTCCAAATGGGTGGTAACTGTGGACCAATGTTTACATCAGAACAACAAGGTTTGAATTTGGTTCCACCATCAAATATGGTTAATTCAAGTTCTGGTTCCGGTTCCGTTGCCGCTGATAATTGGCCTCAGACCTACATCAACAATATAAACAACAATAGAATCTCTGAACAATCTCTGTGGAGTACTGTCAGCACCACTTCAATTTCTGCTGCTAATTCTGATAGGAATGGTGGCAGCAGCGGCGTAGACGGCGTTTCAGCTTCTTTGGGTCCAAATCAATGGCCTGATCTCTCAGGATTCAACCCTCCTCAGTGA 951 0.4437 MEQDGGGCSRGGGDGRRGEINKQAHNHSQPQKCPRCDSFNTKFCYYNNYSLSQPRFFCKTCRRYWTQGGTLRNVPVGGGCRKGKRPKTSATSSSGISIGNSSLTHAHAHAHAQSALQQSTDQSTMAALTRDPSSVLSSFSSTVPFYQGGVGYMSSFAAFNPSLNPNLSPHGFNPSLNAPGLGSSSNLGLLQGFNVAAALGNSTQGQNRPSQFFQMGGNCGPMFTSEQQGLNLVPPSNMVNSSSGSGSVAADNWPQTYINNINNNRISEQSLWSTVSTTSISAANSDRNGGSSGVDGVSASLGPNQWPDLSGFNPPQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10448 316 ProSiteProfiles Zinc finger Dof-type profile. 31 85 IPR003851 GO:0003677|GO:0006355
Vifa1g10448 316 MobiDBLite consensus disorder prediction 1 33 - -
Vifa1g10448 316 MobiDBLite consensus disorder prediction 282 316 - -
Vifa1g10448 316 Pfam Dof domain, zinc finger 29 85 IPR003851 GO:0003677|GO:0006355
Vifa1g10448 316 ProSitePatterns Zinc finger Dof-type signature. 33 69 IPR003851 GO:0003677|GO:0006355
Vifa1g10448 316 MobiDBLite consensus disorder prediction 86 127 - -
Vifa1g10448 316 MobiDBLite consensus disorder prediction 76 127 - -
Vifa1g10448 316 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 234 IPR045174 GO:0003700|GO:0006355
Vifa1g10448 316 MobiDBLite consensus disorder prediction 282 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10448 Vifa-Chr1 1749045323 1749046273 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10448 26 94 C2C2-Dof Transcription Factor Family AT5G60850 76.812 1.87e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g10448 zf-Dof 4.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10448 - - tpra:123905519 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10448 1 1749045323 1749046273 Vifa1g10448 1 1749045323 1749046273 ECH