Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10446 ATGTTAGCTAACTGCGAGAAAATGGTTCCCATCCCTCCACCAACTACTAATCAATGGCCACAGAATCAAATAGATGATGCTAAGATAATGGAAAAAAAAGGTCAAGAGCTTCTGCAACAGCAGCAACAAGCACTCAAGTGTCCTCGTTGTGATTCATCAAACACAAAATTCTGTTACTACAACAACTACAGTTTGTCACAACCAAGACACTTCTGCAAAGCCTGTAAGCGTTATTGGACAAGAGGTGGTACTCTTAGGAATGTTCCTGTTGGTGGTGGCTACAGAAGAAACAACAAACGCAGTAGTAGTGGTCCTACTCTCATCAAAAGATCAATATCCACCATTGAAACCACTTCTACTACTACTACTACTACTACTAATTCTTCTTCTCCTTCTTCAACTCCGAGTTCAACCTCAAATCATATGAACCCTATGTTTTATGGCTTATCTAGTACTAATAATAACCCTTGTGAAGTGAATCTTCCATTTTCAAGGTTTAATATTAATTCTAGACTCTCAACAACTTCAGGCTATGATCTTCAGCCTCAGATGAATCTTATTGGGTTAGGTTTTTCATCCGGGTTTGGTAATAATGGTTATACAAACGGGTTTAATACTTCAAATAATAACTATGATTCAATGTTTAGTTCTTCAGCTTCTGCAACAAATAATACATCTGTTATGCCTTCTATGTTGAGCTCTACTCTACTGCAACATAAATTCTTCGACGATGGTTTGAAATATGGTTCAGATGCAGGTATCAACAGTGCTTTCCAAGATTTGGAATTTGGCTCAAAAATGCAAAACCAGATGGAGCATATGGGTGGTTTTTATGATCCTGCTTCTTCACTTTACTTGAATACAACATCATCAACATCAGCTATTGGTGTGTGGAATGATCAAGGTGGAAATAATATTGGTTCATCAGTCACTTCTCTCATCTAG 945 0.3757 MLANCEKMVPIPPPTTNQWPQNQIDDAKIMEKKGQELLQQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGYRRNNKRSSSGPTLIKRSISTIETTSTTTTTTTNSSSPSSTPSSTSNHMNPMFYGLSSTNNNPCEVNLPFSRFNINSRLSTTSGYDLQPQMNLIGLGFSSGFGNNGYTNGFNTSNNNYDSMFSSSASATNNTSVMPSMLSSTLLQHKFFDDGLKYGSDAGINSAFQDLEFGSKMQNQMEHMGGFYDPASSLYLNTTSSTSAIGVWNDQGGNNIGSSVTSLI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10446 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 224 IPR045174 GO:0003700|GO:0006355
Vifa1g10446 314 Pfam Dof domain, zinc finger 43 99 IPR003851 GO:0003677|GO:0006355
Vifa1g10446 314 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Vifa1g10446 314 MobiDBLite consensus disorder prediction 96 143 - -
Vifa1g10446 314 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Vifa1g10446 314 MobiDBLite consensus disorder prediction 89 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10446 Vifa-Chr1 1748349880 1748351051 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10446 1 314 C2C2-Dof Transcription Factor Family AT1G28310 37.607 9.44e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g10446 zf-Dof 3.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10446 - - psat:127081971 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10446 1 1748349880 1748351051 Vifa1g10446 1 1748349880 1748351051 ECH