Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g10306 ATGGGTGAAGAGAATCAAGCGATAAAGCTATTTGGTGCAACGATAAAACTTCATGACGTGGGAGTAAAAGAAAGCGAAGAAGATCCAACGGTGGAGAAGAGTTCAGAGAAGATCATACCATGTCCAAGATGCAAGAGCATGGAAACTAAATTCTGTTATTTCAACAACTACAACGTTAATCAGCCTAGACATTTTTGTAAGAGCTGTCAGAGGTATTGGACGGCTGGTGGAGCTCTCCGTAACGTACCGGTAGGAGCCGGTCGTCGGAAGGCTAAGCCGCCGGGTCATGAAGATAGCGGCTCGAATTCGCCGGATAGTTGTCTTTATCAAGGTGATTCTGATGATCATGGACATAAGTTTGGATTAGATTTGGATAAGTGGCAGGTTGAAACGGTTCCTCGGAGTGGTTTCCGGGAAGTTTTTTCCGGTAAGCGGCGGAGAAAGAATTCAGGTTGTTATTCGTTAGCTATGATGTAA 477 0.4486 MGEENQAIKLFGATIKLHDVGVKESEEDPTVEKSSEKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGALRNVPVGAGRRKAKPPGHEDSGSNSPDSCLYQGDSDDHGHKFGLDLDKWQVETVPRSGFREVFSGKRRRKNSGCYSLAMM 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g10306 158 MobiDBLite consensus disorder prediction 84 108 - -
Vifa1g10306 158 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Vifa1g10306 158 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Vifa1g10306 158 PANTHER CYCLIC DOF FACTOR 2 25 98 IPR045174 GO:0003700|GO:0006355
Vifa1g10306 158 Pfam Dof domain, zinc finger 37 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g10306 Vifa-Chr1 1718811719 1718812195 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g10306 3 154 C2C2-Dof Transcription Factor Family AT1G29160 47.701 1.07e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g10306 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g10306 - - tcc:18596691 191.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g10306 1 1718811719 1718812195 Vifa1g10306 1 1718811719 1718812195 ECH