Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09415 ATGACGGACACCACTGATGACATTGCAGAGGAAATATCCTTCCAAAGCTTCGACGATGACTGTAGATTGCTCGGAAATCTTCTCAACGACGTCATGCAACGGGAAGTTGGCACCGCCTTTGTTGAAAAACTTGAAAAGATTCGAATCCTTGCACAGAGTGCTTGTAATATGAGACAGGCAGGGATTGAGGACATGGCAGACATGTTGGAGAAGCAGTTGGCTTCTGAGTTATCCAACATGACATTGGAAGAAGCTCAAACACTTGCCCGTGCCTTCGGTCACTATCTTACTTTGATGGCCATAGCAGAAACCCACCATAGGGTTCGAAAAGGTGTCAACATGGCAAATTTTGCAAAATCTTGTGATGACAGCTTTCGCCAACTCTTGCAGGATGGAATTTCCCCAGATGACCTTTATAATACAGTTTGCAACCAGGCGGTTGAAATTGTTCTTACAGCTCATCCCACGCAAATTAATCGACGTACCTTGCAATACAAACACATTAAGATTGCTCATCTTTTAGATTATAATGACCGACCTGATCTTGGCCATGAAGATCGAGAAATGGTGATTGAAGATCTGGTGAGAGAGATAACTTCGATATGGCAGACAGATGAGCTTAGACGTCAGAAACCTACTCCAGTTGATGAAGCTAGAGCTGGATTGAATATTGTGGAGCAGTCGCTCTGGAAAGCTGTTCCTCATTATTTACGTCGAGTCAGCAATGCTTTAAAGAAGCACACGGGGAAACCACTTCCATTGACTTGCACTCCCATAAAGTTTGGGTCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTTACAAAAGATGTTTCACTTTTGTCAAGATGGATGGCAATTGACCTCTATATTCGGGAAGTAGACAGTCTGAGATTTGAGCTATCCATGAAGAGGTGCTCTGATAAGTTGTCAAAATTGGCACATGCAATTCTAGAAGGTTCTGATGCTAACAACGAGACTCAACGAGAGCATTGGAGCCAACCAGAGAGTAGAAGTCAGTCAAAACATTTAAATCTGACGGCTTCATTACTCCCATCTAAACTTCCAGCTAGAGCTCATTTACCTTCTTGTGCCGTAAATGGTGAATCTGATCATCCAAGACTCGACATCCCGGGACCTGATTACAAACAAGTCAATCACAAGGATGGTAAGACTTCAACTACAAATATGAGTAATGCGGGAAGTTCCAGTAGCCATTCATCCCCAACAAGTTCAGAGAGTTCCAATAATTCATCAATTACAATTCCACGCTCTCCTAGTCAACAACTTCTTGCTCAGAGGAAATTATATGCAGAATCCCATATGGGAAGATCTAGTTTTCAGAAGCTTTTGGAGCCAAAGCTCCCTCATCTTCCTGGAATTGCTCCTTACAGGGTTTTCCTCGGGGATGTAAAAGATAAGCTTCAGAGAACCCGTAGACGGTTGGAACTGCTTCTGGAGGATTGTCCAGGTGAATTTGATCCTTCTCAATACTATGAAACAACAGAGCAGCTTTTGGAACCTCTGCTCCTCTGTTATGAATCTATGCAATCTTGTGGATCTGGTGTGTTAGCTGATGGTCGACTTGCTGATCTGATCCGTAGAGTTGCTACCTTTGGCATTGTGTTAATGAAGCTTGACTTGCGTCAGGAATCTGGAAGACATGCTGATACACTTGATGCAATTACAAAGTATTTGGATATGGGTACATACAGTGAATGGGATGAAGAAAAAAAATTGGATTTCTTAACAAGAGAACTTAAAGGGAAGAGGCCACTAGTTCCTACTAGTATAGAGGTTGCTCCAGATGTTAAAGAAGTCCTTGATACTTTTCGAATTGCTGCCGAGCTAGGGAGTGATTCACTTGGAGCCTATGTGATCTCTATGGCTTCTAATGCAAGTGATGTCCTTACAGTAGAGCTCTTACAGAAGGATGCTCGTCTTACAGTTAGTGGGAAATTAGGAAGTGCATGTCCAGGTGGAACGCTTCGGGTGGTTCCTCTATTTGAAACTGTGAAGGACCTAAGAGGAGCTGGTTCAGTTATCAGGAAACTTCTATCTATAGATTGGTACCGCCAGCACATTATTAAAAACCATAATGGACACCAAGAGGTTATGGTTGGGTATTCTGATTCTGGTAAAGATGCTGGTCGATTTACTGCTGCTTGGGAACTTTACAAAGCTCAAGAGGATGTAGTGGCTGCTTGCAATGAATACGGTATTAAGGTTACGCTGTTTCATGGCCGCGGAGGGAGTATTGGTCGTGGCGGAGGCCCAACATATATGGCTATTCAGTCCCAGCCACCTGGCTCAGTGATGGGAACACTTCGGTCAACTGAACAGGGAGAGATGGTGCAGGCCAAGTTTGGGTTGCCACAGACAGCTGTTAGACAACTTGAAATATACACGACAGCTGTGCTACTTGCTACCCTTCGTCCACCTCTGCCACCCCGAGAAGAAAAATGGCGTAATCTGATGGAAGACATATCAAAAATCAGTTGCCAGAGTTACCGCAGTGTAGTGTATGAAAATCCAGAATTCTTGAGCTACTTCAACGAGGCAACTCCTCAAGCAGAGCTTGGGTTCCTGAACATAGGTAGCCGGCCGACGAGGAGAAAGGCGACTACAGGAATTGGACACCTTCGTGCAATTCCATGGATATTTGCATGGACACAAACGAGATTTGTTCTTCCTGCTTGGCTTGGAGTTGGAGCAGGTTTGAAAGGTGCTTGTGAGAAAGGACTAACTGAAGAGCTAAAAGTAATGTACAAAGAGTGGAATTTCTTTCAAAGCATAATAGACCTGATTGAGATGGTATTGGGAAAAGCAGATATTTCTATTGCTAAGCACTATGATGAAGTTCTTGTGTCAGAGGAGAGACAAGAACTTGGTCGTGAACTAAGGAAAGAGCTGATTACAACAGGGAAGTTTGTGAGTGTTATTAGTGGGCATGACAAACTTCTGCAGAATAACAGAACATTGAAGAGGTTGATTGAAAATAGACTTCCTTTTCTTAATCCCATGAACATGTTGCAGGTGGAGATACTTAAAAGGTTAAGACGTGATGATGATAACCTTAAAGCAAGAGATGTTCTCCTTATCACCATTAATGGTATTGCTGCAGGGATGAGGAACACCGGCTAA 3159 0.4337 MTDTTDDIAEEISFQSFDDDCRLLGNLLNDVMQREVGTAFVEKLEKIRILAQSACNMRQAGIEDMADMLEKQLASELSNMTLEEAQTLARAFGHYLTLMAIAETHHRVRKGVNMANFAKSCDDSFRQLLQDGISPDDLYNTVCNQAVEIVLTAHPTQINRRTLQYKHIKIAHLLDYNDRPDLGHEDREMVIEDLVREITSIWQTDELRRQKPTPVDEARAGLNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYIREVDSLRFELSMKRCSDKLSKLAHAILEGSDANNETQREHWSQPESRSQSKHLNLTASLLPSKLPARAHLPSCAVNGESDHPRLDIPGPDYKQVNHKDGKTSTTNMSNAGSSSSHSSPTSSESSNNSSITIPRSPSQQLLAQRKLYAESHMGRSSFQKLLEPKLPHLPGIAPYRVFLGDVKDKLQRTRRRLELLLEDCPGEFDPSQYYETTEQLLEPLLLCYESMQSCGSGVLADGRLADLIRRVATFGIVLMKLDLRQESGRHADTLDAITKYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPTSIEVAPDVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLTVELLQKDARLTVSGKLGSACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYRQHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYGIKVTLFHGRGGSIGRGGGPTYMAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTAVRQLEIYTTAVLLATLRPPLPPREEKWRNLMEDISKISCQSYRSVVYENPEFLSYFNEATPQAELGFLNIGSRPTRRKATTGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLKGACEKGLTEELKVMYKEWNFFQSIIDLIEMVLGKADISIAKHYDEVLVSEERQELGRELRKELITTGKFVSVISGHDKLLQNNRTLKRLIENRLPFLNPMNMLQVEILKRLRRDDDNLKARDVLLITINGIAAGMRNTG 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09415 1052 MobiDBLite consensus disorder prediction 379 393 - -
Vifa1g09415 1052 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 150 161 IPR018129 -
Vifa1g09415 1052 Pfam Phosphoenolpyruvate carboxylase 462 1052 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 Pfam Phosphoenolpyruvate carboxylase 19 339 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 3 1052 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 MobiDBLite consensus disorder prediction 394 431 - -
Vifa1g09415 1052 Gene3D Phosphoenolpyruvate/pyruvate domain 406 546 - -
Vifa1g09415 1052 Gene3D Phosphoenolpyruvate/pyruvate domain 289 366 - -
Vifa1g09415 1052 MobiDBLite consensus disorder prediction 368 431 - -
Vifa1g09415 1052 FunFam Phosphoenolpyruvate carboxylase 1 426 547 - -
Vifa1g09415 1052 Coils Coil 473 493 - -
Vifa1g09415 1052 PRINTS Phosphoenolpyruvate carboxylase signature 202 218 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 PRINTS Phosphoenolpyruvate carboxylase signature 149 162 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 PRINTS Phosphoenolpyruvate carboxylase signature 261 276 IPR021135 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 Hamap Phosphoenolpyruvate carboxylase [ppc]. 9 1052 IPR022805 GO:0006099|GO:0008964|GO:0015977
Vifa1g09415 1052 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 710 722 IPR033129 -
Vifa1g09415 1052 MobiDBLite consensus disorder prediction 326 347 - -
Vifa1g09415 1052 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 17 1052 IPR015813 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09415 Vifa-Chr1 1489524040 1489545572 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09415 1 1489524040 1489545572 Vifa1g09415 1 1489524040 1489545572 ECH