Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09359 ATGCAAACCTTCAAACCCGCTCAATCTAACTCTCAACTCTATTGCCACCAGTCCTTCTTGCTTCGCGGAGACGATATAAATAGAAACCAAATGCGGTTTTCTGATCTTGGAGATTTTCACCATTCTTCTCCTTTCTTTCAACAACAAGATGCTCTTGATTTAACTTCAACTTGTATGTTTAACAGTGTAAAGTCCAACAATCTTGCTATTGGTGCCACTAACATGCATTATGGAACAACAATCAACACCACTGTTAGTTCTGCGGAGATTGCTTCAAATGGAGCAGGGTGTTCGGATGCAGGGCAGCAGCAGCAGCAACTGACGTGCAACAAGGGAATAGCTTCCTTGCCTTTGGGGAACAGTCATGTTGAGAACTGGGCTGATTCTGGAATGGCTGATAATAGCCAACAGACTGATGATAATTCTGCTGATATTGATATTGATAGCGATGATAAACACCAATCCAATAGAGGAAATGCTCACTCCAAGGATCAGACAGAGTTCAGAGCTAAAGATCACAAGACCCTTCGTAGACTTGCTCAGAATCGTGAGGCGGCAAGGAAGAGCCGGTTACGGAAAAAGGCTTATGTACAGCAGCTGGAGAGCAGCCGAGTCAAGCTTGTGCAATTAGAGCAAGAGCTTCAACGAGCACGTCAACAGGGCATCTTTATTGCAAATCCTGGAGATCAAGGTCATCCAACTGTTGGAAATGGTGCCTTAGCATTTGACTTGGAATATGCCCACTGGGTTGACGAGCACCAACGTCTGCTCAACGATCTAAGATCGGCATTAAATTCTCAAATGGGTGATAATGAATTGCATCTTCTCGTTGATGGTGTTATGGCACATTACAACGAATTATTCAGGTTAAAGAAAATAGGGGCAAAGGCAGATATATTTCACATGCTTTATGGGCTATGGAAGACACCGGTAGAAAGATTTTTTATTTGGCATGGTGCATTCCGTTCATCAGAACTTCTTAAGATAGTCAAGAACCATCTCGAGCCATTAACTGAAAATCAGATGATGGGAATTTGTAATCTGCAGCAGTCTACACAGCAGGCTGAGGATGCATTATCACAAGGCATGGAAGTATTGAAACAATCTCTTTTAGAAATACATTCCTCTACCTCATCAGTACCTAGTACTGGCTCTGGAGATGTTGCTGATTACATGGGCCAGATGGCATTTGCAATGAGCAAGCTTGCATCACTAGAGGAATTCCTTCAAAAGGCTGACCTCTTGAAGCAAGAATCTCTACAACAGTTGCAAAGAATTTTGACAACGCGTCAGACCGCTCGGGCACTCCTTGTCCGAAATGATTACATTTCAAGACTAAGAGCACTTAGTTCTTTATGGCTTGCTCGCCCAAGGGAGTAA 1380 0.4319 MQTFKPAQSNSQLYCHQSFLLRGDDINRNQMRFSDLGDFHHSSPFFQQQDALDLTSTCMFNSVKSNNLAIGATNMHYGTTINTTVSSAEIASNGAGCSDAGQQQQQLTCNKGIASLPLGNSHVENWADSGMADNSQQTDDNSADIDIDSDDKHQSNRGNAHSKDQTEFRAKDHKTLRRLAQNREAARKSRLRKKAYVQQLESSRVKLVQLEQELQRARQQGIFIANPGDQGHPTVGNGALAFDLEYAHWVDEHQRLLNDLRSALNSQMGDNELHLLVDGVMAHYNELFRLKKIGAKADIFHMLYGLWKTPVERFFIWHGAFRSSELLKIVKNHLEPLTENQMMGICNLQQSTQQAEDALSQGMEVLKQSLLEIHSSTSSVPSTGSGDVADYMGQMAFAMSKLASLEEFLQKADLLKQESLQQLQRILTTRQTARALLVRNDYISRLRALSSLWLARPRE 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09359 459 Coils Coil 193 220 - -
Vifa1g09359 459 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 177 192 IPR004827 GO:0003700|GO:0006355
Vifa1g09359 459 MobiDBLite consensus disorder prediction 127 142 - -
Vifa1g09359 459 ProSiteProfiles DOG1 domain profile. 239 456 IPR025422 GO:0006351|GO:0043565
Vifa1g09359 459 MobiDBLite consensus disorder prediction 124 174 - -
Vifa1g09359 459 SUPERFAMILY Leucine zipper domain 174 217 IPR046347 GO:0003700|GO:0006355
Vifa1g09359 459 Pfam bZIP transcription factor 171 212 IPR004827 GO:0003700|GO:0006355
Vifa1g09359 459 SMART brlzneu 170 233 IPR004827 GO:0003700|GO:0006355
Vifa1g09359 459 Pfam Seed dormancy control 257 331 IPR025422 GO:0006351|GO:0043565
Vifa1g09359 459 PANTHER TRANSCRIPTION FACTOR TGA9 119 459 - -
Vifa1g09359 459 FunFam BZIP family transcription factor 173 222 - -
Vifa1g09359 459 MobiDBLite consensus disorder prediction 146 174 - -
Vifa1g09359 459 Gene3D - 173 222 - -
Vifa1g09359 459 CDD bZIP_HBP1b-like 174 225 - -
Vifa1g09359 459 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 172 216 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09359 Vifa-Chr1 1478865090 1478868520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09359 3 459 bZIP Transcription Factor Family AT1G68640 52.743 4.62e-150 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g09359 DOG1 1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09359 1 1478865090 1478868520 Vifa1g09359 1 1478865090 1478868520 ECH