Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09227 ATGGCCACTTTTGCAAGCAGAGGAATTGGAGTCACAAAGCTCCATCACGACCCTCACATTCCCAACCTTAAATCTCTATTTCTTGGCCAATCACTTGGAATCAAACCCTCAACTAGTAATCAACAACCACCATGCAGTGTCAAATTCTCAACCCCAAAAGCCTTTCATGGAGGTGGTGAATGGCTTCACTCAGTTCACAACCTTTTTGTTGGTGTTGGTGTTGGACTTCCATGCACTGTCATGGAGTGTGGCGACATGATTTACAGAAGCACTCTTCCTAAGCCTACTGGGCTCACACTTACTATCCCTGGTGTTGTTCTTGCTTTTGGTGCTCTCTCTTATCTTTGGGCTACACCTGGCGTTGCTCCTGGTTTCTTTGATATGTTTGTGCTTGCTTTTGTTGAAAGGTTCTTTAGACCAACTTTCAGAAAGGATGATTTTGTTCTAGGGAAGAAGCTGGGCGAAGGATCATTTGGAGTTGTTTATAGAGTCACACTAGCTAACAAACCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAGAGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTACGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGCAGTTTGAAGGGGATGCCACCTTAGCTGATCTGTTGCAGAGTAGAGATTTTCCTTACAATGTTGAAACATTGATTCTTGGTGAGGTACAAGATTTGCCTAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATCATAAGACAACTCTTGTTTGCATTAGACGGTCTTCACTCAACTGGTATTGTACATAGGGATATTAAGCCACAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCGGCCACAGATTTGCGAGTTGGCATCAACTATATTCCTAAGGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAGCAGTACATTATGAGTACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCTACTGCACTCTCTCCAGTCTTATGGCAGTTGAATCTTCCTGACAGATTCGATATCTACAGTACTGGTCTAATATTTCTCCAAATGGCATTTCCTGGCTTACGCACCGATAATAGCCTCATACAATTCAACCGTCAATTGAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAACTGTCGAGCCTCGATGTGGTGCTGAACTTAGGAGGGGCTTTGAGCTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTTCGATACAAAGCAAGGCAAAGGCTGAGTGCAAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGAACACAAAAGGATGGCGGATTCACTGAAGCTCAGCTCCAGGAACTTAGAGAAATTGTGCCCAAGAAAAAAGCTGGTGCAAAGAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAGAGGAAAATTATAAAAACCTTAAATGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA 1617 0.4255 MATFASRGIGVTKLHHDPHIPNLKSLFLGQSLGIKPSTSNQQPPCSVKFSTPKAFHGGGEWLHSVHNLFVGVGVGLPCTVMECGDMIYRSTLPKPTGLTLTIPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERFFRPTFRKDDFVLGKKLGEGSFGVVYRVTLANKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWQFEGDATLADLLQSRDFPYNVETLILGEVQDLPKGLERENRIIQTIIRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRTDNSLIQFNRQLKRCDYDLVAWRKTVEPRCGAELRRGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGTQKDGGFTEAQLQELREIVPKKKAGAKRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09227 538 SUPERFAMILY Protein kinase-like (PK-like) 130 467 IPR011009 -
Vifa1g09227 538 ProSitePatterns Protein kinases ATP-binding region signature. 153 180 IPR017441 GO:0005524
Vifa1g09227 538 ProSiteProfiles Protein kinase domain profile. 147 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09227 538 Pfam Protein kinase domain 148 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09227 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Vifa1g09227 538 Gene3D Transferase(Phosphotransferase) domain 1 256 473 - -
Vifa1g09227 538 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 45 512 - -
Vifa1g09227 538 Gene3D Phosphorylase Kinase; domain 1 134 228 - -
Vifa1g09227 538 SMART serkin_6 147 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g09227 538 Coils Coil 504 524 - -
Vifa1g09227 538 FunFam Serine/threonine-protein kinase STN7, chloroplastic 256 470 - -
Vifa1g09227 538 CDD STKc_SNT7_plant 151 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09227 Vifa-Chr1 1460829728 1460833076 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09227 265 466 Core Cell Cycle Gene Families AT2G38620 30.986 4.53e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Vifa1g09227 Pkinase 1.2e-18 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09227 1 1460829728 1460833076 Vifa1g09227 1 1460829728 1460833076 ECH