Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09186 ATGGCTTCTTCTTTTCCTCTTTATCAATTAACGCCTTGTTTCTTCTCAAAAACCCAGTTCCAAGGTTTGCACCATAGCTATTTGTGGCGACCTATGTTTGGCTCTTGTGCTCAAAACAAACTGCGACCTGTTAAACCTTCGGTTCATGCTGCCCCGTTTCCCTTGCTTCAGCCTCTCACAGCTGAAGATTCATCTTCTGAGTTGGAGCCTGTGGATCCTGATTTCTACAAGATAGGATTTGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGCAAGGGCCAAATGGTTTTGGTGTGTATGCTTCTAAAGATGTTGAACCTCTTCGCCGATCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACAATAAGCAAGAAGCTCCCATGGATGTTTTTCCCTGATATAATTCCTCTTGGTCATCCAATATTTGATATTATCAACTCGACACATCCAGAGACAGATTGGGATTTAAGATTAGCCTGCCTTCTCTTGTTTTCATTCGACTGCAAAGACAACTTTTGGCAGTATTACGGTGATTTCTTACCAAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTACAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTACAATTAGAATTGAGCAACAACGAGTTTTAAATTTCTGGGAGAAGCACTGGCATATTGGTGCGCCCCTAAAAGTGAAACGTCTTGCTCGTGATCCTAAAAGGTTCATTTGGGCAGTGGGAATGGCACAGTCAAGATGTATCAACATGCAAATGAGAATGTGTGCACTAACTCAGGATGCAAATATGCTGATTCCTTATGCCGATATGCTGAACCATTCATTTGAGCCAAATTGTTTTTTCCATTGGCGGTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAACAGATTCGAAAAGGAGACGAGATGACAGTTGATTACATGAGTTCACAGAAGAATGCCATGTTAATGCAAAGATACGGATTTTCCTCGCCAGTGAATCCTTGGGATGTGATCAAATTCTCGGGAAATGCACAAATCCATTTGGATTCCTTCTTGTCAGTTTTCAACATATCAGGCCTTCCTGAAGAGTATTATCGTAATGAAGTTCTATCGAATGCCGGAGATACTTTTGTTGATGGAGCAGTCATAGCCGCAGCGCGAACATTGCCAACATGGTCAGTTGGAGACGTGCCTCCAATCCCAAGCGAAGAAAGGAAGGCTGCAAAGGCAATACAACAAGAGTGCAAACGAATACTTGCAGAATTTGCTACCACCTCTAAGCAAGACCAGAAATTGTTAGATGCTTCACCGGAAGCTACGAGAACGCTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAATTGTTATTGGAAAAAGTTATGCTTGCATTGGAGATCTATCATGAGCAATTACTCTTCTGA 1443 0.42 MASSFPLYQLTPCFFSKTQFQGLHHSYLWRPMFGSCAQNKLRPVKPSVHAAPFPLLQPLTAEDSSSELEPVDPDFYKIGFVRSMRAYGVDFKQGPNGFGVYASKDVEPLRRSRVIMEIPLELMLTISKKLPWMFFPDIIPLGHPIFDIINSTHPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSADESTSLLLATEEELLELQDPDLASTIRIEQQRVLNFWEKHWHIGAPLKVKRLARDPKRFIWAVGMAQSRCINMQMRMCALTQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQQIRKGDEMTVDYMSSQKNAMLMQRYGFSSPVNPWDVIKFSGNAQIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSVGDVPPIPSEERKAAKAIQQECKRILAEFATTSKQDQKLLDASPEATRTLEAAIKYRLHRKLLLEKVMLALEIYHEQLLF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09186 480 CDD SET_LSMT 88 335 - -
Vifa1g09186 480 Gene3D set domain protein methyltransferase, domain 1 80 335 - -
Vifa1g09186 480 SUPERFAMILY SET domain 96 336 IPR046341 -
Vifa1g09186 480 Pfam SET domain 97 320 IPR001214 GO:0005515
Vifa1g09186 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 332 471 IPR036464 -
Vifa1g09186 480 Gene3D - 345 477 IPR036464 -
Vifa1g09186 480 ProSiteProfiles SET domain profile. 76 321 IPR001214 GO:0005515
Vifa1g09186 480 FunFam Plastid transcriptionally active 14 357 477 - -
Vifa1g09186 480 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 81 335 - -
Vifa1g09186 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 71 450 - -
Vifa1g09186 480 Pfam Rubisco LSMT substrate-binding 409 461 IPR015353 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa1g09186 SET 1.7e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09186 1 1452627701 1452632410 Vifa1g09186 1 1452627701 1452632410 ECH