Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09169 ATGACAAGAAAATCCCTTATTTGTTCTTTGGTTCTTGTGATGATTGTTTCTTTCGTTATAATTCATGTTTGTGGTGAGAATTTTCATGTTAGGAAAATTTCCAATGGAAACCATCATGAAACAATACGTAGATTGCAATCATTGAAAGCCTCGTTAACAAGACATGATTCCATTGCTTCAACTCCTTCTTCTTCCTTCTCTCATTCTCCTTCACCTTCTTCTCAGCCAAGTGAGGGTATGAACAATCCAAGAGTATTCTATGTGACATCTTATGGTGCAGACCCAACAGGAAATTCAGATAGTACTGAAGCTATCCTTGCAGCCATAGCAGATGCAGCCAATGTTTTAAGTGAAGGACATTTGATGGAAGGCATCAACAACCTTGGAGGTGCGCAGGTTAATCTCGAAGGTGGAAATTACTTGATCCGCCGGTCACTCATGCTTCCGGTATCCGGCGTTGGTAACCTCATGATACATGGAGGAACATTAAAAGCCTCAGATGATTTTCCTATAGATGGCTATATTATTGATTTATCATCAACCTCTTCTAATGAAAAGGATTCCTACAATTTTGAGTACATAACTCTCAAGGATCTTTTATTAGATTCAAACTTTAGAGGAGGGGGCATTTCAGTCATAAACTCACTCAGAACAAACATAGACAACTGTTACATTACACATTTCACAACAAATGGAATTTTAGTCCAAAGTGGTCATGAAACATACATAAGAAACTCGTTCCTCGGCCAACACATAACCGCGGGAGGCGATAAAGCCGAAAGAAATTTCTCAGGAACAGCGATAAACCTCCAAGGTAACGATAACGCTGTCACGGATGTTGTAATTTTCTCGGCTCAAATAGGAATCATGGTCACTGGTCAAGCCAACATATTTTCTGGTGTACATTGTTACAATAAGGCCACAGGATTCGGCGGGACCGGGATTTATTTGAAACTACCTGGTTTAACACAAACAAGAATTGTGAATTCTTACATGGATTACACTAGTATTGTTGCTGAAGATCCTGTTCAACTTCATATTTCTAGTAGCTTCTTCCTCGGTGATGCGAATATTGTGTTGAAATCTATGAGTGGTGTCTTAAATGGTGTTACTATTGTTGATAACATGTTCTCTGGATCAAATCAAGGTGTTGAAATTGTTCATTTGGATAAATCAAATAGTCCTTTTCATCAAATCGATCAAGTTATTGTTGATAGGAACATTGCAAGAGGAATGAGTTTAAAGGCAACGGTTGCGAAAATGTCTATGCAAGGGAATGGAACTTTATGGAATGTTGATTTCAACAACGTTCTTCTTTTTCCTAACCTTATTAAAAATGTTCAGTACTCATTGAGTTCAACAGGTAGGAGTTTTCCTAGACATGCGATTAGGAATGTGTCGGATAATCGCGTTGTGATTCAAACGGATAAAGTGGTTACTGCGAATGTTTTCGTCACGGTGGATCAGAGTATGGTGAATTGA 1482 0.3846 MTRKSLICSLVLVMIVSFVIIHVCGENFHVRKISNGNHHETIRRLQSLKASLTRHDSIASTPSSSFSHSPSPSSQPSEGMNNPRVFYVTSYGADPTGNSDSTEAILAAIADAANVLSEGHLMEGINNLGGAQVNLEGGNYLIRRSLMLPVSGVGNLMIHGGTLKASDDFPIDGYIIDLSSTSSNEKDSYNFEYITLKDLLLDSNFRGGGISVINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKAERNFSGTAINLQGNDNAVTDVVIFSAQIGIMVTGQANIFSGVHCYNKATGFGGTGIYLKLPGLTQTRIVNSYMDYTSIVAEDPVQLHISSSFFLGDANIVLKSMSGVLNGVTIVDNMFSGSNQGVEIVHLDKSNSPFHQIDQVIVDRNIARGMSLKATVAKMSMQGNGTLWNVDFNNVLLFPNLIKNVQYSLSSTGRSFPRHAIRNVSDNRVVIQTDKVVTANVFVTVDQSMVN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09169 493 PANTHER POLYGALACTURONASE QRT3 14 491 IPR039279 GO:0004650
Vifa1g09169 493 MobiDBLite consensus disorder prediction 58 81 - -
Vifa1g09169 493 SMART pbh1 367 388 IPR006626 -
Vifa1g09169 493 SMART pbh1 272 293 IPR006626 -
Vifa1g09169 493 SMART pbh1 215 237 IPR006626 -
Vifa1g09169 493 Pfam Pectate lyase superfamily protein 88 309 IPR024535 -
Vifa1g09169 493 SUPERFAMILY Pectin lyase-like 84 460 IPR011050 -
Vifa1g09169 493 Gene3D - 86 493 IPR012334 -
Vifa1g09169 493 FunFam Polygalacturonase QRT3 88 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09169 Vifa-Chr1 1450618912 1450620982 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09169 1 1450618912 1450620982 Vifa1g09169 1 1450618912 1450620982 ECH