Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09119 ATGATGAGAGATATGATGATGGGAAGTAGTATATATTCATCATCATCATCAAGAGGTGGTGGAGAGATGGACATAGACATGAACATGATGAATATGAAACCTGCATGGCTAGAGAGGTTGATGGATGAAACATTCTTTGGTGATTGTGGGGTCCACAAAAATCGAAGGAAGAACGAGAAGAACATTTTTTGCTTACAATGTTGTCTTAGCATCTGCCCCCACTGCTTATCTTCTCATACCTCTCATCCTCTTCTCCAGGTGAGAAGGTATGTTTACCACAATGTAATTCGATTGGATGATATGGAAAAGCTTATAGATTGTTCCAATATTCAGCCCTATACTATTAACAGTGCGAAAGTGATATTTTTAAATCAGAGGCCACAATCAAGGTCATGCAAAGTTACAGCCAATGCTTGCTTCACTTGTGACAGAATTCTTCAGGATCCATTCCATTTCTGTTCTCTCTCATGCAAGGTAGAATACATGGTGTACGAGGGTGAAAGTTTGTCGAACATTTTACATCGATTTGATGAGTCAGACTTTGCAATATCGCAATTCGAGGGACTAAGAGCAGAAGGATCTGAGGTAATTGATGAAGATAACAACCAAATAGGCCCAAGTTCTTCAAATTACTCCATCATCAATGAAGATCAGGCCACCAGCAACAATAGATTCCTCCCTCTTCCTGCCATTGTCCTCTCTCTTGGTAGCAGAAGAAAAGGTGCTCCTCAAAGGGCCCCACTCTCCTGA 750 0.4093 MMRDMMMGSSIYSSSSSRGGGEMDIDMNMMNMKPAWLERLMDETFFGDCGVHKNRRKNEKNIFCLQCCLSICPHCLSSHTSHPLLQVRRYVYHNVIRLDDMEKLIDCSNIQPYTINSAKVIFLNQRPQSRSCKVTANACFTCDRILQDPFHFCSLSCKVEYMVYEGESLSNILHRFDESDFAISQFEGLRAEGSEVIDEDNNQIGPSSSNYSIINEDQATSNNRFLPLPAIVLSLGSRRKGAPQRAPLS 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09119 249 ProSiteProfiles Zinc finger B-box type profile. 49 98 IPR000315 GO:0008270
Vifa1g09119 249 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 31 248 - -
Vifa1g09119 249 Pfam PLATZ transcription factor 88 159 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09119 Vifa-Chr1 1443962241 1443967896 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa1g09119 PLATZ 1.8e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09119 1 1443962241 1443967896 Vifa1g09119 1 1443962241 1443967896 ECH