Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08910 ATGTCACCTGATGAAACACATCAAACCTCAAAGTCTGCAAAAGACAACAACATCAACAGCCAACAAGGTTCTGGTGGTCGGAAAACATCTTCATCAACGTCTTCCTCGACAAAGCCACAAGAACAAAACATGAAGTGTCCTAGATGTGACTCACCCAACACAAAATTCTGCTACTACAACAACTACAGCTTAACACAACCAAGACATTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGAGCTTTACGCAACGTTCCAATCGGTGGTGGATGTAGAAAAAACAAGAGAGTGAAATCATCGTCAAGACTCTCTTGTGATTCAAAAGATTCTGCTACTTCTTCTTCGGAGTTTGTTGGTGGCTTCAAGTTTCTTCATTCTCTTTCTTCTCCTTCCATGGATTTTCATCTTGGTAATGGTTTACCTTTTCCTAGGCTTCAACTTCAGCACCACCCTCCGTTATTTAACCATTTTTCTTCTTTTGGAGAAACTTCTTCTGCTATGAATTACCCAGCTACTTCAAATTCTCTTGCTGCTATGAATTACCCTTTTTCAACAGGTAATAACAGTAATTATAATGGTGCAATTCAAGGTTTGAGTTCAATGAATATTAATCATGGTAACAATAACATTGCTTCTTCTATTGAGTCATTGAGTTCTATGAACCAAGACTTGCACTGGAAGCTACAGCAACAGAGATTATCCATGCTGTTTGGTGGAGAAAACCAGAAAGATAATAACAATCAGACGGAGAAACCTCTACAACCTATTTTGTTTCAGAATCTCGAGGTTTCCAAACCCGCTGGTGGGAATTTCTGTGTTGGAAATTCAACAAGAGAAGCTTCGAATGCTGGAGGAGATACACCGACCGAGTGGTTTTTCGGTAATTCTTATGGTTCTTCTGCTGCTACACCTACTACAAGTGGTGGAGCTGGTCATCGTGATAATGGAAACAACTGGAATGGTGGTGGTGTTCATGCTTGGAATGATGTGCAGCAGCAATATAGTGCTATGCCCTAG 1023 0.4027 MSPDETHQTSKSAKDNNINSQQGSGGRKTSSSTSSSTKPQEQNMKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKRVKSSSRLSCDSKDSATSSSEFVGGFKFLHSLSSPSMDFHLGNGLPFPRLQLQHHPPLFNHFSSFGETSSAMNYPATSNSLAAMNYPFSTGNNSNYNGAIQGLSSMNINHGNNNIASSIESLSSMNQDLHWKLQQQRLSMLFGGENQKDNNNQTEKPLQPILFQNLEVSKPAGGNFCVGNSTREASNAGGDTPTEWFFGNSYGSSAATPTTSGGAGHRDNGNNWNGGGVHAWNDVQQQYSAMP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08910 340 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Vifa1g08910 340 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Vifa1g08910 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 239 IPR045174 GO:0003700|GO:0006355
Vifa1g08910 340 MobiDBLite consensus disorder prediction 304 327 - -
Vifa1g08910 340 MobiDBLite consensus disorder prediction 12 46 - -
Vifa1g08910 340 Pfam Dof domain, zinc finger 42 98 IPR003851 GO:0003677|GO:0006355
Vifa1g08910 340 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08910 Vifa-Chr1 1410756627 1410757649 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08910 24 340 C2C2-Dof Transcription Factor Family AT5G65590 42.462 2.15e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vifa1g08910 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g08910 - - gmx:100780729 407.527