Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g08687 ATGTTTCTCACTATCTCCTTCTTCATTTTCTCTCTTCTTTCCCTCTCTCATGCATCAGTAGTAGATTTCTGCGTAGCAGATTACAATGCACCAAACGGCCCAGCCGGATATTCATGCAAAACACCCAAAAAAGTAACCGCCGATGACTTCGTCTTCCACGGCCTAGCCACAAGTGGAAACACTACAAACATTATCAAAGCCGCTGTTACGCCTGCATTCGACGCACAATTTCCTGGCGTAAATGGACTTGGAATCTCCATTGCGCGTTTAGATTTAGCTGCAGGTGGAGTCATTCCACTTCACACTCACCCCGGTGCTTCAGAAGTATTGGTTGTTATTCAAGGAACAATTCTTGCTGGTTTTGTTTCATCTGCTGACGTTGTTTACATTAAAACACTTAACAAAGGTGATGTTATGGTTTTTCCTCAAGGGTTGGTGCATTTCCAAATTAACAGTGGCCGTTCTAATGCACTTGCTTTTGTTAGCTTTAGCAGTGCTAATCCTGGTTTACAGATATTGGATTTCGCTTTGTTTAAAAGTGATTTTCCTACTGAGCTGATTACACAAACTACTTTCATTGATGCTGTTGTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGTAGTGGTTAA 630 0.4206 MFLTISFFIFSLLSLSHASVVDFCVADYNAPNGPAGYSCKTPKKVTADDFVFHGLATSGNTTNIIKAAVTPAFDAQFPGVNGLGISIARLDLAAGGVIPLHTHPGASEVLVVIQGTILAGFVSSADVVYIKTLNKGDVMVFPQGLVHFQINSGRSNALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAVVVKKLKGVLGGSG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g08687 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 202 - -
Vifa1g08687 209 Gene3D Jelly Rolls 17 208 IPR014710 -
Vifa1g08687 209 SMART Cupin_1_3 53 199 IPR006045 -
Vifa1g08687 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Vifa1g08687 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Vifa1g08687 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Vifa1g08687 209 FunFam Auxin-binding protein ABP19a 17 208 - -
Vifa1g08687 209 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Vifa1g08687 209 Pfam Cupin 54 195 IPR006045 -
Vifa1g08687 209 CDD cupin_OxOx 16 205 IPR001929 GO:0030145
Vifa1g08687 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g08687 Vifa-Chr1 1370494390 1370495019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g08687 7 208 Miscellaneous Gene Families AT5G20630 69.951 8.54e-101 289
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00403 4 108647884 108649097 Vifa1g08687 1 1370494390 1370495019 PCT