Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07902 ATGAATCTTTTCACTTCATTTTTGTTTCTCTCTTTGATTTCAACTCTCTCTCTTGTGGACTCTGAAACTCTACCTGAAAATGAAGTTTGGGCACTTACAAGCTTTAAAGAAGCTATCTATGAAGACCCAAATCAAGCTTTATCAAATTGGAATATGCTAGAATCAGATCTTTGTAACTGGTTTGGTGTCACTTGCACTGTTGCTGGAGATCATGTCACCAAGCTAAATATATCGGGTTCATCGTTGAAGGGTTTTCTTGCGAGGGAGTTGGGGCAAATTACCTATTTGCAAGAACTAATTTTGCACGGGAACAATCTAATTGGAACTATACCGAAAGAATTGTTCATGTTGAAATCTCTCCAGGTGTTGGATTTGGGAATGAATCACTTAACTGGACCGATTCCTACAGAGATTGGAAATTTAACTCTACTTGTGAACATAAACCTGCAGTCAAACGGGTTGACTGGTAGATTACCTCCTGAGCTTGGAAATTTGAGATACCTTCAAGAACTTTGGCTCGATAGGAACAGGCTTCAAGGAACCATTCCTGCTAGTGGAACTTATAGTTTTGCTTCAACTATGCATGGAACGTATGTTTCAAAAGATAATGCAACTGGCTTGTGCCGTTCACCTCAGTTAAAATTAGCAGACTTTTCATATAACTTTTTAGTCGGTAGCGTACCAAAATGCCTGGAGTATCTTCCGAGGCAAAGCTTTCAAGGGAACTGCCTCCAGAGCAATGATCCAAAGCAGCGGCCTTCCACACAATGTGGCGGTGCTTCACCTGCCAAAAGTCAGCCAGTGGTGAGCAACCAATACCACCAAATAGCTGATCATGCACGCAAGCATCACGGAGCTTCGGAACCTACTTGGCTTTTGGCTCTAGAAATAGTAGCAGGAACTATGGTCGGTTCTCTCTTTCTGGTTGCGGCTCTCGCTACTGTTCAAAGATGCAACAACAAATCATCTATCATTATTCCTTGGAAAAAATCTGGCAGCCTGAAAGATCACAATGCAGTATATATAGACCCGAATATGTTAAAGGACGTGAGAAGGTATAGCAGACTAGAGCTTGAAGAGGCGTGCGAAGACTTCAGTAACATAATTGGGTCCTCACCAGACAGTGTGGTCTACAAGGGAACCATGAAAGGTGGACCTGAGATTGCTGTAATTTCCCTCTGCATCAAGGAGGAGAGTTGGACAGGGTATCTGGAGCTCTACTTCCAGAGAGAGGTGGTGGAATTGGCAAAGTTAGACCATGAGAATACTGGAAAACTACTGGGATATTGTAGAGAGAGCAATCCGTTTTCAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACTCTTCACGAGCATTTACATTGTTATGAAGAAGGATGCCAGTTCTCCTGGACACGGCGTATGAAAATCGTCATAGGCATTGCGCGTGGGCTCAAGTATTTGCACACAGAAGTTGAACCTCCGTTCACTATCTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGTTGGTTGATTTTGAAAGTTGGAAGACAATTCTTGAAAGATCAGAAAAGAATTCCGGTACTATTAGCAGCCAAGGTGCTGTTTGTGTTCTTCCAAACTCCCTTGAGGCACGGCATCTTGATACCAAAGGAAACGTACACGCTTTTGGAGTACTTCTACTAGAGATAATCAGTGGGCGGCTTCCACACTGTAAGGAGAAAGGTTACTTGGTGGATTGGGCGAAAGACTATCTTGAAAAGCCAGAAGTAATGCCACAATTGGTGAATCCAGAATTGAAAAATTTTAGACAAGATGACCTCAAAGTAATATGCGAGGTGATAACTCTATGTATCAATCCTGATACAGCCGCACGTCCATCTATGCGAGAATTATATAGCATGCTGGAGAGCAGAATCGACACATCAGTTAACATAGATTTCAAGTCGTCGTCATCTTTGGCTTGGGCTGAACTTGCACTTTTATCATAA 1992 0.4227 MNLFTSFLFLSLISTLSLVDSETLPENEVWALTSFKEAIYEDPNQALSNWNMLESDLCNWFGVTCTVAGDHVTKLNISGSSLKGFLARELGQITYLQELILHGNNLIGTIPKELFMLKSLQVLDLGMNHLTGPIPTEIGNLTLLVNINLQSNGLTGRLPPELGNLRYLQELWLDRNRLQGTIPASGTYSFASTMHGTYVSKDNATGLCRSPQLKLADFSYNFLVGSVPKCLEYLPRQSFQGNCLQSNDPKQRPSTQCGGASPAKSQPVVSNQYHQIADHARKHHGASEPTWLLALEIVAGTMVGSLFLVAALATVQRCNNKSSIIIPWKKSGSLKDHNAVYIDPNMLKDVRRYSRLELEEACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIKEESWTGYLELYFQREVVELAKLDHENTGKLLGYCRESNPFSRMLVFDYASNGTLHEHLHCYEEGCQFSWTRRMKIVIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGTISSQGAVCVLPNSLEARHLDTKGNVHAFGVLLLEIISGRLPHCKEKGYLVDWAKDYLEKPEVMPQLVNPELKNFRQDDLKVICEVITLCINPDTAARPSMRELYSMLESRIDTSVNIDFKSSSSLAWAELALLS 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07902 663 FunFam Inactive receptor-like serine/threonine-protein kinase 337 444 - -
Vifa1g07902 663 PANTHER PROTEIN MALE DISCOVERER 2 10 663 - -
Vifa1g07902 663 SUPERFAMILY Protein kinase-like (PK-like) 342 637 IPR011009 -
Vifa1g07902 663 Gene3D Phosphorylase Kinase; domain 1 337 444 - -
Vifa1g07902 663 SUPERFAMILY L domain-like 26 235 - -
Vifa1g07902 663 Gene3D Transferase(Phosphotransferase) domain 1 445 653 - -
Vifa1g07902 663 ProSiteProfiles Protein kinase domain profile. 363 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g07902 663 Pfam Leucine rich repeat 95 154 IPR001611 GO:0005515
Vifa1g07902 663 Pfam Protein tyrosine and serine/threonine kinase 367 636 IPR001245 GO:0004672|GO:0006468
Vifa1g07902 663 FunFam Leucine-rich repeat receptor-like protein kinase 25 184 - -
Vifa1g07902 663 Gene3D Ribonuclease Inhibitor 145 245 IPR032675 -
Vifa1g07902 663 Gene3D Ribonuclease Inhibitor 27 144 IPR032675 -
Vifa1g07902 663 MobiDBLite consensus disorder prediction 244 268 - -
Vifa1g07902 663 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07902 Vifa-Chr1 1232616146 1232619649 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa1g07902 PK_Tyr_Ser-Thr 3.4e-20 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07902 1 1232616146 1232619649 Vifa1g07902 1 1232616146 1232619649 ECH
Vifa1g07902 1 1232616146 1232619649 Vifa6g03504 6 1153914827 1153918276 PCT