Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07817 ATGGCAATATTGGCATCTATTCTTCATGCTCGTAGCTTCATGTTGATTGCTTATGCAATAATGTTCAGTTTCATGGGAGAACCAACAGTAACTGCTGTGACATTTAGACCCAGTAAATGGTCTCTTGCTCATGCCACATTTTATGGAGATGAAACTGCTTCTGAAACCATGGGAGGAGCATGTGGATATGGGAATCTGTTTACGAATGGTTACGGAACAGATACAGTGGCTTTAAGCTCAACTTTGTTCAACAACGGCTATGCATGTGGAAGTTGTTTCCAGATTAAATGCTATCAAGCGAGTGCATGTAACAAAAATGTGGCCTTCACCACTGTCACCGCCACCAATCTTTGTCCACCTAACTGGTCCAAGCCCTCCAACAATGGTGGGTGGTGTAATCCACCACGAGTTCATTTTGACATGGCCAAACCTGCATTCATGAAAATTGCACAGTGGAAAGCTGGTATTGTCCCTGTTATGTACCGCAGGGTTCCATGCCAAAGGAAGGGAGGGATTAGATTCTCTTTCCAAGGAAATGGGTACTGGCTATTGGTGTATGTGATGAATGTGGGAGGTGGAGGAGATATTTCAAGCATGATGGTGAAAGGAAGTAGAACAGGATGGATTAAAATGAGCCATAACTGGGGTGCTTCTTACCAAGCATTTGCAACACTAGGTGGTCAAGCTCTATCTTTCAGGGTTACTTCATACACTACTAAAGAGACTATTATTGCATGGAATGTTGTTCCTTCTAATTGGAATGTGGGACTCACTTATTCCGCTAGCACCAACTTCCACTGA 801 0.4332 MAILASILHARSFMLIAYAIMFSFMGEPTVTAVTFRPSKWSLAHATFYGDETASETMGGACGYGNLFTNGYGTDTVALSSTLFNNGYACGSCFQIKCYQASACNKNVAFTTVTATNLCPPNWSKPSNNGGWCNPPRVHFDMAKPAFMKIAQWKAGIVPVMYRRVPCQRKGGIRFSFQGNGYWLLVYVMNVGGGGDISSMMVKGSRTGWIKMSHNWGASYQAFATLGGQALSFRVTSYTTKETIIAWNVVPSNWNVGLTYSASTNFH 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07817 266 SUPERFAMILY PHL pollen allergen 168 260 IPR036749 -
Vifa1g07817 266 Gene3D - 26 167 IPR036908 -
Vifa1g07817 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Vifa1g07817 266 SMART dpbb_1 75 161 IPR007112 -
Vifa1g07817 266 Pfam Expansin C-terminal domain 172 250 IPR007117 -
Vifa1g07817 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Vifa1g07817 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Vifa1g07817 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Vifa1g07817 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Vifa1g07817 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Vifa1g07817 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Vifa1g07817 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Vifa1g07817 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
Vifa1g07817 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Vifa1g07817 266 CDD DPBB_EXPA_N 40 166 - -
Vifa1g07817 266 Gene3D - 171 266 IPR036749 -
Vifa1g07817 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Vifa1g07817 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Vifa1g07817 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Vifa1g07817 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Vifa1g07817 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Vifa1g07817 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vifa1g07817 266 PANTHER EXPANSIN-A15 16 261 IPR002963 GO:0009664
Vifa1g07817 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07817 Vifa-Chr1 1220737081 1220738038 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07817 1 1220737081 1220738038 Vifa1g07817 1 1220737081 1220738038 ECH
Vifa4g03038 4 979218966 979220149 Vifa1g07817 1 1220737081 1220738038 PCT