Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07154 ATGGATCCACCACTTATCTCCATAGCCGCGTGTAATGTCATTCAACCAAATTACCCTGACTTGGAGTCTTTATCACCACGACCACAACCACCACCACGATCACGCGACACAACTAATGATGAGCCTTTACCTAATGTCCCAAACGCCAAGCTTCGTCTTATGTGCAGCTACGGAGGCCATATAATGCCACGCCCTCACGACAAATCCCTATTTTACGTTGGTGGAGACACTCGAATAGTGGTGATCGACCGCAGTTCTTCTCTGAAAGACCTATGTTCGCGCCTTTCGAGAACAATTCTCAATGGAAGACCTTTTACTCTCAAGTACCAGCTTCCAAATGAAGACCTTGACAGTCTTATCACAGTCACAACAGATGAAGATCTCGACAACATGGTCGAAGAATATGATCGAATAGCATCTGCATCTTCGACCATGAAATCTTCTTCGAGACTCAGAGTGTTTCTGTTCTTCACGAAACCAGAGTCCACTCTCTCAATGGGATCACTCCTTGATGATGCCAAATCTGAAACATGGTTTGTCGATGCACTCAATAACTCGGGGATTCTCTCGAGGGGTGTGTCGGACTCAGCAGGGGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCTAGCAATAACTTGGAAGCTCAGGGAGTAACAGTAGTAGAGTCATTGAACCTTCTCGAAAACAACAACAATAACAACAACGTTAAGAATGTTTTTGATGTTGTTAATGTTGTGAACTCAACACCTGGTTCACCAATGCTGGAAAATAGTCCATCTTCTTCTTCTTTGTCTACTTCAATGGCGAATTTGCCTCCGATCCGTGTTCGTGTTGACGAAAACAGTGGTAGTAGGCTTCAACAAGAGAATAAAGTTGCAATGAAGCATGATGATGGATTTGTTGTTTCTTCTGCTAATGTGGCTATGGCTGCGATTCCTGCAACATTGACTATGGCTTCAGCTGGCGTGGTCACTACTACTGTTACTAGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGACTATGGAGGAGTGATTGGAGCTCGAAAATCGCCTTTACCATTGCAGCTTGTTCAGCCGAGGACTAGTGGCGGTTTGAGTCTTCCTTCACCGGATTCGGTTACAAGTGATACTAGTAGTATTGCATCTACTAATTCTTTCTCCAAAATCAGTTATCATCAAGAACAAGTCCAAATCCAACCTACAAACATAGACAACAAACCTCAAGATTCTAGTTACATCTTACCTCAACAGCTGAATCAAAATCAACAACTCCAACAACCACAACAACAACAATTTGTTCATTCCAACACTCACTATATCCACCACCCAACATCCACAAATCAAGTTCCAATCTCATCATACTACCAAGTTTATCCCCCACAATCACAACAACAACAACTTCACAATCCAATTGGTCAACAACAGTATCCAATTTATGTAATGCCTATTGGAACCACACAACAACCATACAACATGACATTACAAAATATAAATGACCCTAATGTTGTATCCTCTATTAGGCCATTAATCCCTCAAAGTGGAACTCCACCAATATACCCTAATAAATCACCTAACCCTAATGTGGCATCAAATTCAACATTTGTTCAAGTACCTTCAAATCAATTTCAACAACAATATGTTGGTTTGCCTCAATTCCATCATCAACCACAGCATCCAATCAATGTAACTCCTTCTAGTGGTGCTAATTATGGTTATGAATATGGTGGCAATGTGGAAGGTCAAGTGTACTATACTCAACATACAACTAATGCTCCTTTGGTTACTCAGTACCAATCCATGACTCCTGCAGCTGCTGCTGCAGTATTATCAGATGCTTCCAATCAGTTTCCTGCCGATAATGTTCAGCAACCAAATAGAACTTCGCAGCCGGTTTAA 1920 0.4151 MDPPLISIAACNVIQPNYPDLESLSPRPQPPPRSRDTTNDEPLPNVPNAKLRLMCSYGGHIMPRPHDKSLFYVGGDTRIVVIDRSSSLKDLCSRLSRTILNGRPFTLKYQLPNEDLDSLITVTTDEDLDNMVEEYDRIASASSTMKSSSRLRVFLFFTKPESTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLEAQGVTVVESLNLLENNNNNNNVKNVFDVVNVVNSTPGSPMLENSPSSSSLSTSMANLPPIRVRVDENSGSRLQQENKVAMKHDDGFVVSSANVAMAAIPATLTMASAGVVTTTVTSDVNVNRVVSDDERSDYGGVIGARKSPLPLQLVQPRTSGGLSLPSPDSVTSDTSSIASTNSFSKISYHQEQVQIQPTNIDNKPQDSSYILPQQLNQNQQLQQPQQQQFVHSNTHYIHHPTSTNQVPISSYYQVYPPQSQQQQLHNPIGQQQYPIYVMPIGTTQQPYNMTLQNINDPNVVSSIRPLIPQSGTPPIYPNKSPNPNVASNSTFVQVPSNQFQQQYVGLPQFHHQPQHPINVTPSSGANYGYEYGGNVEGQVYYTQHTTNAPLVTQYQSMTPAAAAAVLSDASNQFPADNVQQPNRTSQPV 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07154 639 SMART PB1_new 65 156 IPR000270 GO:0005515
Vifa1g07154 639 Pfam PB1 domain 66 156 IPR000270 GO:0005515
Vifa1g07154 639 Coils Coil 639 639 - -
Vifa1g07154 639 MobiDBLite consensus disorder prediction 23 37 - -
Vifa1g07154 639 MobiDBLite consensus disorder prediction 364 388 - -
Vifa1g07154 639 MobiDBLite consensus disorder prediction 18 47 - -
Vifa1g07154 639 SUPERFAMILY CAD & PB1 domains 66 167 - -
Vifa1g07154 639 CDD PB1_UP2 54 156 - -
Vifa1g07154 639 Gene3D - 70 157 - -
Vifa1g07154 639 PANTHER OS05G0427100 PROTEIN-RELATED 31 498 - -
Vifa1g07154 639 ProSiteProfiles PB1 domain profile. 50 156 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07154 Vifa-Chr1 1103938337 1103940710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07154 39 185 MAP Kinase Kinase Kinase AT5G57610 42.568 1.42e-27 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03497 3 1007544086 1007546574 Vifa1g07154 1 1103938337 1103940710 ECH
Vifa1g07154 1 1103938337 1103940710 Vifa1g07154 1 1103938337 1103940710 ECH