Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07149 ATGCCTGTTCTCACCAGACGCGTGAAATGGAGAAGACCCATTTCAGAATCGGATCCAACTTCACAAAATTTTCCCATAATCCAATCCATTTCTTGCAAATCCACAATCTGCACCCTGTTTTCCACTCTCTCCAACAACAACACATCCAATGAAACCACACATGATTCCAACAAAAACAGGACAAAGAACAACAAAAACAACAGTAACAATGTTAATACCACCAATACAAAGTTTTCTGCAGCATCAACCCTCAGAGGACTCGGTTGCATCGCCGGTGCATCACAACAAGTGTCAGTACCGGCGGTGATTCGGTCCTCTGAAGATTGGCAAAAGAATAGAAGAAAAAAGAAGAATAGAAGGAACAGTAACATTAACAGAATCAACAACAAAACATGTCATGATGTTGTTGTTGATGACGATGATGTTCCTTTTCAGGATGTTTGGTGTGGACCTGGAATTGGGTTCTCAGCTGATGCTGCTGCTGTTTCTGAAGATTGTGTTGTGACAAGAAAGAACGTTTCTTCAAGAGGAAAACTTGATAATGGGGAGAGAATAACACATAGGGAGCGTTCATCTTATTTTGGAAGACACAATTTAAATCAAGAAAGTATATCATTTTTGGATGATGATAATAGTTCTGATGTTTTCACAACACGTCATGGATTAGAGTCTTTTGGTAATGGTAGATTCTATCGTAATTCTGAGATAATGATAATTCAAGGAAAACGATTCATGGGAGGACGGATTAATTCACACGACCAATTTAGAGATTGGCGACTCGATGTTGATAATATGTCATACGAGCAATTGCTTGAGCTCGGAGAAAGAATCGGCTATGTGAAAACTGGACTTAAAGAAGATGAGATGAGACATAACATAAAGAAAATTAAGGTTTTGTTTTCAAATGATGTATCAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAAGAGTATGAATTAGATGATGAATTGGGGATGTTAAATTGTGAACACTGCTATCATTTTCAGTGTATAAAACAATGGCTTGTGCTTAAAAATTTCTGTCCGGTTTGTAAGCATGAAGTCGCGGTTCGACATTGA 1086 0.3794 MPVLTRRVKWRRPISESDPTSQNFPIIQSISCKSTICTLFSTLSNNNTSNETTHDSNKNRTKNNKNNSNNVNTTNTKFSAASTLRGLGCIAGASQQVSVPAVIRSSEDWQKNRRKKKNRRNSNINRINNKTCHDVVVDDDDVPFQDVWCGPGIGFSADAAAVSEDCVVTRKNVSSRGKLDNGERITHRERSSYFGRHNLNQESISFLDDDNSSDVFTTRHGLESFGNGRFYRNSEIMIIQGKRFMGGRINSHDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMRHNIKKIKVLFSNDVSKHQIDKKCTICQEEYELDDELGMLNCEHCYHFQCIKQWLVLKNFCPVCKHEVAVRH 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07149 361 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Vifa1g07149 361 MobiDBLite consensus disorder prediction 46 75 - -
Vifa1g07149 361 SMART ring_2 313 353 IPR001841 -
Vifa1g07149 361 SUPERFAMILY RING/U-box 312 358 - -
Vifa1g07149 361 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 47 357 IPR045191 GO:0061630
Vifa1g07149 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 359 IPR013083 -
Vifa1g07149 361 Pfam Ring finger domain 312 354 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07149 Vifa-Chr1 1103736570 1103744542 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g07149 73 268 C3H Transcription Factor Family AT1G73760 39.556 1.14e-33 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07149 1 1103736570 1103744542 Vifa6g04089 6 1347806429 1347808573 ECH
Vifa1g07149 1 1103736570 1103744542 Vifa1g07149 1 1103736570 1103744542 ECH