Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07029 ATGACAGGTTCATCAAGAAATAGCCGGGACGGAAGCAGCACTCACAATAGAAGATACGGCAAATTAAAAAAGGGCGACGACGAATTCGACGGTTACAACTCCGAGAATCATCCAAGAAAAAACAGCCCCGTCATCACCATCGACGCACCCCATTTGGATCCTTTAATGGCAGCCGATAACTCTCCTTACGACGCCACTCTTTCGCCATTATCCAAATCACCTTGGTCCTCTCATCTCAACGAAGAAGCTTCATCTTCTAGCGAAGAAGCTCTTGTTGGTTCCTTAGTCCGCGAGGAAGGTCATATTTACTCCCTAGCGGCAACTAAGGATTTATTATACACTGGTTCCGACAGTAAGAACATTCGTGTTTGGAAGAACCAAAAGGAATTCGCGGGGTTTAAATCAAACAGCGGTTTGGTTAAAGCAATTGTTATCGCCGGTGAGAAAATACTCACCGGACATCAAGACGGAAGAATTCGTGTTTGGAAAGTATCCGGGAAGAACGAACGGATTCACAGAAGAGTCGCAACATTGCCGACGCTAAGAAACTATATAAAATGCTCCATGAAACCAAGTAACTACGTCGAAGTTAAAAAACATCGTAACATGTTATGGATTAAACATTATGACGCGATCTCGTGTCTTAGCTTAACGGAAGATCATTCGTTAATTTACTCAGCTTCATGGGATAAAACGTTTAAGGTTTGGCGTTCTTCGACTTACAAATGTTTGGAATCAGTGACGGCTCACGACGATGCAGTTAATGCGCTTGTCGTCGGATTCGACGTTTTGGTTTTCACGGGTTCAGCCGACGGTACAGTTAAAATGTGGCGACGAGAAATGCAAGGGAAAGCGACGAAGCATTTTTTTTCACAAACGTTGTTGAAACAAGAATGTGCGGTGACAGCTTTAGCGTTGAATTCGGAAGGGACATTTTTATACGCAGGTTCTTCGGATGGTTTGGTGAATTATTGGGTGAGGGAAACAAATTTGGAACACAGTGGAGTTTTGAGGGGTCATAAATTGGCGGTTTTGTGTTTAGCGACGGCTGGGAGTTTGTTATTTAGTGGTTCTGCTGATATGGCGATATGTGTGTGGAAAAGATCAATGAGTAATGAACATGTTTGCATGTCAGTGTTGTCAGGACATAGCGGGCCGGTGAAGTGTCTCGCGGCCGAGAAGGATCCCGATGCGATGTTGAATGAGAGAAAGTGGATTTTGTATAGTGGGAGTTTGGATAAGTCCGTTAAGGTTTGGAAGGTTAATGAGAGTGCAACTCCTGGACCACAAAATAATCATCCGCAGCTACCTCGTCTTAGTGTTAGCGGCGAGTTTCCTAGAGTGTCGTCGCTGAGGAAAATGGGGTCGAGAAGATACTAA 1380 0.4435 MTGSSRNSRDGSSTHNRRYGKLKKGDDEFDGYNSENHPRKNSPVITIDAPHLDPLMAADNSPYDATLSPLSKSPWSSHLNEEASSSSEEALVGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNERIHRRVATLPTLRNYIKCSMKPSNYVEVKKHRNMLWIKHYDAISCLSLTEDHSLIYSASWDKTFKVWRSSTYKCLESVTAHDDAVNALVVGFDVLVFTGSADGTVKMWRREMQGKATKHFFSQTLLKQECAVTALALNSEGTFLYAGSSDGLVNYWVRETNLEHSGVLRGHKLAVLCLATAGSLLFSGSADMAICVWKRSMSNEHVCMSVLSGHSGPVKCLAAEKDPDAMLNERKWILYSGSLDKSVKVWKVNESATPGPQNNHPQLPRLSVSGEFPRVSSLRKMGSRRY 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07029 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 246 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 88 125 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 287 326 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 373 420 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 330 367 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 199 237 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 126 163 IPR001680 GO:0005515
Vifa1g07029 459 SMART WD40_4 240 278 IPR001680 GO:0005515
Vifa1g07029 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 325 IPR001680 GO:0005515
Vifa1g07029 459 MobiDBLite consensus disorder prediction 11 35 - -
Vifa1g07029 459 MobiDBLite consensus disorder prediction 1 46 - -
Vifa1g07029 459 CDD WD40 99 420 - -
Vifa1g07029 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 367 IPR001680 GO:0005515
Vifa1g07029 459 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Vifa1g07029 459 PRINTS G protein beta WD-40 repeat signature 407 421 IPR020472 -
Vifa1g07029 459 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Vifa1g07029 459 Gene3D - 63 187 IPR015943 GO:0005515
Vifa1g07029 459 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Vifa1g07029 459 Pfam WD domain, G-beta repeat 376 420 IPR001680 GO:0005515
Vifa1g07029 459 Pfam WD domain, G-beta repeat 208 236 IPR001680 GO:0005515
Vifa1g07029 459 Pfam WD domain, G-beta repeat 99 125 IPR001680 GO:0005515
Vifa1g07029 459 Pfam WD domain, G-beta repeat 334 367 IPR001680 GO:0005515
Vifa1g07029 459 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 277 IPR001680 GO:0005515
Vifa1g07029 459 FunFam BnaA09g28200D protein 195 282 - -
Vifa1g07029 459 Gene3D - 188 442 IPR015943 GO:0005515
Vifa1g07029 459 SUPERFAMILY WD40 repeat-like 99 425 IPR036322 GO:0005515
Vifa1g07029 459 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 49 425 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g07029 Vifa-Chr1 1086831130 1086832509 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07029 1 1086831130 1086832509 Vifa1g07029 1 1086831130 1086832509 ECH
Vifa2g02864 2 812943105 812946827 Vifa1g07029 1 1086831130 1086832509 PCT