Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06987 ATGCTTTTTACTTCTTATACAACCCAATTGGATGTTCCTGAAGTAAAGAATTTCAAACTAACAGGTGTGTATTTCACTGCAATTTCAAAGAAAAAACTTCCCTTTTCCTCACAAATCACGATACCCCTTTTCTATTTTTTAGGAAAAAGGAGAATAATTTTGTGTAATATGGGTTGGCTTACCAAGTTTCTCAATGGCTCTAATCATAGAATTTTGCGAGGTCAATACAATGGCAAACATGGTGATGATAGAATTTGGGATAATCAACATAGTTCAGTGGATGATTTGACGGATGTTGAGAAAGAAGATATTGACCGCGCTATTGCACTTTCTCTATCAGAGGAGGATCTGAAAGGGAAGAAAGTTGTTGAGGATGACTCTCGGTCAGAAGAAGACGAACAACTTTGTGAAATTGATGAGCAAGATGAGAATGTTGGTAAAGTTCGACGAAATGAAGATGAACTGCTAGCTAGAATTCAGCAGGATGAAAATGAACGCCGTGCCAAAGATCAACTTGAGGAAGATGAGGAACTTGCTAAGGCAATTCAATTGAGTTTGAGCGTTGGTTCTCCTCCTCGGCATGGCAATGATTCTTTACCTCAACCTCCTCCCCACCTCTTTCCACCTGGATTTAGAATCTGTGCTGGATGCAATGCTGAGATTGGTCATGGGAGATTTTTAAGTTGCATGGGAGGTGTCTGGCATCCACAATGCTTCTGCTGCCATACTTGCCATCTTCCAATCACTGATTATGAGTTTTCGATGAATAGCAACCGTCCGTACCATAAATCCTGCTACAAGGAGAAGCATCATCCAAGATGCGATGTTTGCAAGAATTTTATCCCGGCTAATTCAGCTGGCCTCATTGAGTATAGAGCTCACCCGTTCTGGATACAAAAATACTGTCCAACACATGAGCTCGACGGCACTCCTCGTTGTTGTAGCTGCGAAAGAATGGAGCCAAAGGATTCAAAATATATTTTGCTTGATGATGGACGAAAGCTATGTCTCGAGTGTCTTGACTCAGCAATAATGGATAGTCATGAATGCCAACCTCTCTACCTTGAAATACTAGAATTTTATGAAGGTTTAAATATGAAATTAGAGCAGCAAGTTCCTATGCTTTTGGTCGAGAGACAAGCACTGAATGAGGCTATGGAGGGAGAAAAGAATGGTCATCACCATTTACCTGAAACTAGAGGACTGTGCTTGTCAGAAGAGCAAACTGTCACCACCATTTTGAAAAGACCAAAGATTGGGGCAGGACACCGAGTCACGGACATGATAACTGAGCCTTATAGACTGACCCGTCGATGTGAAGTGACAGCCGTTCTTGTTTTGTATGGCCTTCCTAGGTTGTTGACAGGATCAATCCTAGCTCATGAGATAATGCATGCATGGCTCAGGCTTAAAGGTTATCCAAACCTGAGTCCAGAAGTTGAAGAGGGAATCTGCCAAGTCTTGGCTCACATGTGGTTAGAATCAGAGCTCTACTCTGGATCTGGGAATAACAATGCACCATCTTCGTCTTCGTCTTCATCATCATCAATGCCACCGTCCTCTGCTGCATCATCAAAGAAGGGTAAACGGTCTGATTTCGAGAAGAAACTTGGCGAGTTTTTCAAACACCAGATTGAGTCCGATACCTCGTCAGCCTATGGAGACGGATTCAGATTGGGTAACAAGGCAGTACTTAGGTATGGTCTCAAAAGTACCCTTGATCATATCCATTTGACCGAAACTTTTCCGTGTTGA 1755 0.4228 MLFTSYTTQLDVPEVKNFKLTGVYFTAISKKKLPFSSQITIPLFYFLGKRRIILCNMGWLTKFLNGSNHRILRGQYNGKHGDDRIWDNQHSSVDDLTDVEKEDIDRAIALSLSEEDLKGKKVVEDDSRSEEDEQLCEIDEQDENVGKVRRNEDELLARIQQDENERRAKDQLEEDEELAKAIQLSLSVGSPPRHGNDSLPQPPPHLFPPGFRICAGCNAEIGHGRFLSCMGGVWHPQCFCCHTCHLPITDYEFSMNSNRPYHKSCYKEKHHPRCDVCKNFIPANSAGLIEYRAHPFWIQKYCPTHELDGTPRCCSCERMEPKDSKYILLDDGRKLCLECLDSAIMDSHECQPLYLEILEFYEGLNMKLEQQVPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILKRPKIGAGHRVTDMITEPYRLTRRCEVTAVLVLYGLPRLLTGSILAHEIMHAWLRLKGYPNLSPEVEEGICQVLAHMWLESELYSGSGNNNAPSSSSSSSSSMPPSSAASSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNKAVLRYGLKSTLDHIHLTETFPC 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06987 584 CDD LIM_DA1 214 266 - -
Vifa1g06987 584 ProSiteProfiles LIM domain profile. 212 272 IPR001781 -
Vifa1g06987 584 Pfam LIM domain 214 269 IPR001781 -
Vifa1g06987 584 Coils Coil 145 165 - -
Vifa1g06987 584 MobiDBLite consensus disorder prediction 503 526 - -
Vifa1g06987 584 Gene3D Cysteine Rich Protein 211 271 - -
Vifa1g06987 584 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 241 295 - -
Vifa1g06987 584 SMART uim 173 192 IPR003903 -
Vifa1g06987 584 SMART uim 99 118 IPR003903 -
Vifa1g06987 584 PANTHER PROTEIN DA1-RELATED 2 59 583 IPR045218 -
Vifa1g06987 584 MobiDBLite consensus disorder prediction 503 530 - -
Vifa1g06987 584 Pfam Protein DA1 363 578 IPR022087 -
Vifa1g06987 584 FunFam Protein DA1-related 1 208 267 - -
Vifa1g06987 584 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 239 - -
Vifa1g06987 584 ProSitePatterns LIM zinc-binding domain signature. 214 248 IPR001781 -
Vifa1g06987 584 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 173 192 IPR003903 -
Vifa1g06987 584 SMART lim_4 213 265 IPR001781 -
Vifa1g06987 584 MobiDBLite consensus disorder prediction 120 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06987 Vifa-Chr1 1079008853 1079012346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g06987 DA1-like 5.2e-104 CL0126
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06987 1 1079008853 1079012346 Vifa1g06987 1 1079008853 1079012346 ECH
Vifa4g02509 4 756904630 756907301 Vifa1g06987 1 1079008853 1079012346 ECH
Vifa1g06987 1 1079008853 1079012346 Vifa4g02509 4 756904630 756907301 PCT