Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06928 ATGACCGGCGGCGGATCGTCGGGGAGGTTACCGACATGGAAAGAGAGAGAAAATAATAAGAGAAGAGAGAGAAGACGGAGAGCTATTGCTGCTAAGATCTACTCAGGTCTTCGAGCTCAAGGTAACTTCAAGCTTCCTAAACACTGTGATAACAACGAGGTTTTGAAAGCTCTTTGCTCTGAAGCTGGTTGGATCGTTGAAGAAGATGGAACTACGTATCGAAAGGGAAGTAAAAGACCACTACCGAATGAGATTGGAGGAACTCCGCCAAATATGAGTGTTTGTTCTTCGATTCAACCAAGTCCACAATCTTCATCGTTTCCGAGTCCACAATCGTCTTCGTTCCCGAGTCCGATACCATCCTATCATGCAAGTCCAACATCATCGTCTTTCCCGAGTCCGACTCGAATGGATGGGATTACAAACCACTCTTCATTTCTCTTACCATTTATTCGCAACATAACTTCTATCCCTACGAATCTTCCACCCCTTAGGATTTCCAACAGTGCTCCGGTTACCCCACCTCTTTCTTCTCCAAGAAGTTCGAAGAGAAAAGCAGATTTTGAATCCATCTCTAATGGTTCCTTTAACTCGTCCTTTCGCCACCCTCTTTTTGCTACCTCTGCACCGTCAAGTCCCTCGCGCCGTAACCACTTACCCCCATCCACCATTCCGGAATGTGATGAGTCAGATGTTTCAACAGTGGACTCTGGTCGATGGGTTAGTTTTCAGACAACAACTGCCCATGGTGCAGCACCTCCTTCCCCTACTTTTAATCTCATGAAACCAGTAATGCAGAAGATCACTCCCCAGGGTTCGATGGATATGATTCATATGAATGAAGGCATGCAATGGACTTCAGGTTCAGCTGCTGAGAGATGTAGAGGCTCAGATTTTGACTTTGAAAATGGCAGAGTTGTGAAGCCGTGGGAAGGTGAGCGAATTCACGAGGTAGGAATGGATGAATTGGACCTTACTCTGGGATTCGGTAAGGCCTGA 999 0.4635 MTGGGSSGRLPTWKERENNKRRERRRRAIAAKIYSGLRAQGNFKLPKHCDNNEVLKALCSEAGWIVEEDGTTYRKGSKRPLPNEIGGTPPNMSVCSSIQPSPQSSSFPSPQSSSFPSPIPSYHASPTSSSFPSPTRMDGITNHSSFLLPFIRNITSIPTNLPPLRISNSAPVTPPLSSPRSSKRKADFESISNGSFNSSFRHPLFATSAPSSPSRRNHLPPSTIPECDESDVSTVDSGRWVSFQTTTAHGAAPPSPTFNLMKPVMQKITPQGSMDMIHMNEGMQWTSGSAAERCRGSDFDFENGRVVKPWEGERIHEVGMDELDLTLGFGKA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06928 332 MobiDBLite consensus disorder prediction 163 180 - -
Vifa1g06928 332 Pfam BES1/BZR1 plant transcription factor, N-terminal 6 143 IPR008540 -
Vifa1g06928 332 MobiDBLite consensus disorder prediction 89 136 - -
Vifa1g06928 332 MobiDBLite consensus disorder prediction 73 136 - -
Vifa1g06928 332 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 328 IPR033264 GO:0003700|GO:0006351|GO:0009742
Vifa1g06928 332 MobiDBLite consensus disorder prediction 163 187 - -
Vifa1g06928 332 MobiDBLite consensus disorder prediction 202 219 - -
Vifa1g06928 332 MobiDBLite consensus disorder prediction 1 25 - -
Vifa1g06928 332 MobiDBLite consensus disorder prediction 202 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06928 Vifa-Chr1 1069392767 1069394400 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vifa1g06928 BES1_N 2.9e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06928 1 1069392767 1069394400 Vifa1g06928 1 1069392767 1069394400 ECH
Vifa1g06928 1 1069392767 1069394400 Vifa2g04362 2 1282917802 1282918209 PCT